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Yorodumi- PDB-1fky: NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39... -
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-Basic information
Entry | Database: PDB / ID: 1fky | ||||||
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Title | NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES | ||||||
Components |
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Keywords | DNA / DEOXYRIBONUCLEIC ACID / B-DNA / K-RAS | ||||||
Function / homology | DNA / DNA (> 10) Function and homology information | ||||||
Method | SOLUTION NMR | ||||||
Authors | Boulard, Y. / Cognet, J.A.H. / Fazakerley, G.V. | ||||||
Citation | Journal: J.Mol.Biol. / Year: 1997 Title: Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. Authors: Boulard, Y. / Cognet, J.A. / Fazakerley, G.V. #1: Journal: J.Mol.Biol. / Year: 1995 Title: Solution Structure of an Oncogenic DNA Duplex, the K-Ras Gene and the Sequence Containing a Central C.A or A.G Mismatch as a Function of Ph: Nuclear Magnetic Resonance and Molecular Dynamics Studies Authors: Boulard, Y. / Cognet, J.A. / Gabarro-Arpa, J. / Le Bret, M. / Carbonnaux, C. / Fazakerley, G.V. #2: Journal: J.Mol.Biol. / Year: 1995 Title: Helical Parameters, Fluctuations, Alternative Hydrogen Bonding, and Bending in Oligonucleotides Containing a Mismatched Base-Pair by Noesy Distance Restrained and Distance Free Molecular Dynamics Authors: Cognet, J.A. / Boulard, Y. / Fazakerley, G.V. #3: Journal: Eur.J.Biochem. / Year: 1995 Title: Solution Structure of Two Mismatches A.A and T.T in the K-Ras Gene Context by Nuclear Magnetic Resonance and Molecular Dynamics Authors: Gervais, V. / Cognet, J.A. / Le Bret, M. / Sowers, L.C. / Fazakerley, G.V. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fky.cif.gz | 35.5 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fky.ent.gz | 25.4 KB | Display | PDB format |
PDBx/mmJSON format | 1fky.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1fky_validation.pdf.gz | 239.7 KB | Display | wwPDB validaton report |
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Full document | 1fky_full_validation.pdf.gz | 243.6 KB | Display | |
Data in XML | 1fky_validation.xml.gz | 1.5 KB | Display | |
Data in CIF | 1fky_validation.cif.gz | 1.8 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fk/1fky ftp://data.pdbj.org/pub/pdb/validation_reports/fk/1fky | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 3279.151 Da / Num. of mol.: 1 / Source method: obtained synthetically |
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#2: DNA chain | Mass: 3405.220 Da / Num. of mol.: 1 / Source method: obtained synthetically |
-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
Software | Name: AMBER / Classification: refinement |
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NMR software | Name: Amber / Developer: KOLLMAN / Classification: refinement |
Refinement | Software ordinal: 1 / Details: MORCAD BY LEBRET ALSO WAS USED. |
NMR ensemble | Conformers calculated total number: 2 / Conformers submitted total number: 2 |