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Yorodumi- PDB-1fil: HUMAN PLATELET PROFILIN I CRYSTALLIZED IN HIGH SALT ACTIN-BINDING... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1fil | ||||||
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Title | HUMAN PLATELET PROFILIN I CRYSTALLIZED IN HIGH SALT ACTIN-BINDING PROTEIN | ||||||
Components | PROFILIN | ||||||
Keywords | CONTRACTILE PROTEIN / ACETYLATION / ACTIN-BINDING PROTEIN / MULTIGENE FAMILY | ||||||
Function / homology | Function and homology information synapse maturation / modification of postsynaptic actin cytoskeleton / negative regulation of actin filament bundle assembly / adenyl-nucleotide exchange factor activity / positive regulation of actin filament bundle assembly / negative regulation of actin filament polymerization / Signaling by ROBO receptors / regulation of actin filament polymerization / positive regulation of ATP-dependent activity / PCP/CE pathway ...synapse maturation / modification of postsynaptic actin cytoskeleton / negative regulation of actin filament bundle assembly / adenyl-nucleotide exchange factor activity / positive regulation of actin filament bundle assembly / negative regulation of actin filament polymerization / Signaling by ROBO receptors / regulation of actin filament polymerization / positive regulation of ATP-dependent activity / PCP/CE pathway / proline-rich region binding / positive regulation of ruffle assembly / negative regulation of stress fiber assembly / positive regulation of actin filament polymerization / positive regulation of epithelial cell migration / actin monomer binding / phosphatidylinositol-4,5-bisphosphate binding / phosphotyrosine residue binding / neural tube closure / RHO GTPases Activate Formins / modulation of chemical synaptic transmission / small GTPase binding / Platelet degranulation / actin binding / cell cortex / actin cytoskeleton organization / blood microparticle / protein stabilization / cytoskeleton / cadherin binding / focal adhesion / glutamatergic synapse / regulation of transcription by RNA polymerase II / RNA binding / extracellular exosome / membrane / nucleus / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Homo sapiens (human) | ||||||
Method | X-RAY DIFFRACTION / molecular replacement / Resolution: 2 Å | ||||||
Authors | Fedorov, A.A. / Pollard, T.D. / Almo, S.C. | ||||||
Citation | Journal: To be Published Title: Crystal Structure of Human Profilin at 2.0 Angstroms Resolution Authors: Fedorov, A.A. / Pollard, T.D. / Almo, S.C. #1: Journal: J.Mol.Biol. / Year: 1994 Title: Purification, Characterization and Crystallization of Human Platelet Profilin Expressed in Escherichia Coli Authors: Fedorov, A.A. / Pollard, T.D. / Almo, S.C. #2: Journal: Annu.Rev.Cell Biol. / Year: 1994 Title: Structure of Actin Binding Proteins:Insights About Function at Atomic Resolution Authors: Pollard, T.D. / Almo, S.C. / Quirk, S. / Vinson, V. / Lattman, E.E. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1fil.cif.gz | 38.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1fil.ent.gz | 26.6 KB | Display | PDB format |
PDBx/mmJSON format | 1fil.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/fi/1fil ftp://data.pdbj.org/pub/pdb/validation_reports/fi/1fil | HTTPS FTP |
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-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 14940.021 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Details: CRYSTALLIZED FROM AMMONIUM SULFATE SOLUTION / Source: (gene. exp.) Homo sapiens (human) / Tissue: PLATELET / Production host: Escherichia coli (E. coli) / References: UniProt: P07737 |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION / Number of used crystals: 1 |
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-Sample preparation
Crystal | Density Matthews: 2.09 Å3/Da / Density % sol: 59 % |
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Crystal grow | pH: 6.7 Details: CRYSTALLIZED FROM AMMONIUM SULFATE SOLUTION, pH 6.7 |
-Data collection
Diffraction | Mean temperature: 290 K |
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Diffraction source | Source: ROTATING ANODE / Type: RIGAKU RUH2R / Wavelength: 1.5418 |
Detector | Type: SIEMENS-NICOLET X100 / Detector: AREA DETECTOR / Date: 1993 |
Radiation | Monochromator: GRAPHITE(002) / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Resolution: 2.3→28.3 Å / Num. obs: 8076 / % possible obs: 94.1 % / Observed criterion σ(I): 2 / Redundancy: 1.28 % / Rmerge(I) obs: 0.041 / Net I/σ(I): 18.2 |
-Processing
Software |
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Refinement | Method to determine structure: molecular replacement Starting model: 1FIL Resolution: 2→8 Å / σ(F): 2
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Refine analyze | Luzzati coordinate error obs: 0.2 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2→8 Å
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Refine LS restraints |
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