+
Open data
-
Basic information
Entry | Database: PDB / ID: 1fc5 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | CRYSTAL STRUCTURE OF MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN | |||||||||
![]() | MOLYBDOPTERIN BIOSYNTHESIS MOEA PROTEIN | |||||||||
![]() | BIOSYNTHETIC PROTEIN / molybdopterin / four modules / with magnesium / Montreal-Kingston Bacterial Structural Genomics Initiative / BSGI / Structural Genomics | |||||||||
Function / homology | ![]() molybdopterin molybdotransferase / molybdopterin molybdotransferase activity / Mo-molybdopterin cofactor biosynthetic process / protein homodimerization activity / identical protein binding / metal ion binding / cytoplasm / cytosol Similarity search - Function | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Huang, W. / Cygler, M. / Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI) | |||||||||
![]() | ![]() Title: The crystal structure of Escherichia coli MoeA, a protein from the molybdopterin synthesis pathway. Authors: Schrag, J.D. / Huang, W. / Sivaraman, J. / Smith, C. / Plamondon, J. / Larocque, R. / Matte, A. / Cygler, M. | |||||||||
History |
|
-
Structure visualization
Structure viewer | Molecule: ![]() ![]() |
---|
-
Downloads & links
-
Download
PDBx/mmCIF format | ![]() | 166.7 KB | Display | ![]() |
---|---|---|---|---|
PDB format | ![]() | 138.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 426.7 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 442.4 KB | Display | |
Data in XML | ![]() | 35.8 KB | Display | |
Data in CIF | ![]() | 51.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data | |
---|---|
Other databases |
-
Links
-
Assembly
Deposited unit | ![]()
| ||||||||
---|---|---|---|---|---|---|---|---|---|
1 |
| ||||||||
Unit cell |
| ||||||||
Details | The biological assembly is a dimer constructed from chain A a symmetry partner generated by the two-fold. |
-
Components
#1: Protein | Mass: 44481.215 Da / Num. of mol.: 2 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() #2: Chemical | #3: Water | ChemComp-HOH / | |
---|
-Experimental details
-Experiment
Experiment | Method: ![]() |
---|
-
Sample preparation
Crystal | Density Matthews: 2.27 Å3/Da / Density % sol: 45.76 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Crystal grow | Temperature: 293 K / Method: vapor diffusion / pH: 6.5 Details: PEG8000, Cacodylate, pH 6.5, VAPOR DIFFUSION, temperature 20K | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal | *PLUS Density % sol: 44 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Crystal grow | *PLUS pH: 7.5 / Method: vapor diffusion, hanging drop / Details: used macroseeding | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
|
-Data collection
Diffraction | Mean temperature: 100 K |
---|---|
Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: ADSC QUANTUM 4 / Detector: CCD / Date: May 28, 2000 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 0.9795 Å / Relative weight: 1 |
Reflection | Resolution: 2.2→50 Å / Num. all: 41012 / Num. obs: 231130 / % possible obs: 98.2 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 5.8 % / Biso Wilson estimate: 40 Å2 / Rmerge(I) obs: 0.059 / Net I/σ(I): 19.6 |
Reflection shell | Resolution: 2.2→2.23 Å / Redundancy: 2.1 % / Rmerge(I) obs: 0.255 / % possible all: 88.3 |
Reflection | *PLUS Lowest resolution: 20 Å / Num. obs: 40862 / Num. measured all: 232716 / Rmerge(I) obs: 0.067 |
Reflection shell | *PLUS % possible obs: 88.3 % / Rmerge(I) obs: 0.209 / Mean I/σ(I) obs: 12.6 |
-
Processing
Software |
| ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Refinement | Resolution: 2.2→50 Å / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
| ||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.2→50 Å
| ||||||||||||||||||||
Refine LS restraints |
| ||||||||||||||||||||
Software | *PLUS Name: CNS / Classification: refinement | ||||||||||||||||||||
Refinement | *PLUS Lowest resolution: 50 Å / σ(F): 0 / Rfactor obs: 0.226 / Rfactor Rfree: 0.277 | ||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||
Displacement parameters | *PLUS |