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Open data
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Basic information
Entry | Database: PDB / ID: 1egj | ||||||
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Title | DOMAIN 4 OF THE BETA COMMON CHAIN IN COMPLEX WITH AN ANTIBODY | ||||||
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![]() | IMMUNE SYSTEM / cytokine receptor complexed to an antibody | ||||||
Function / homology | ![]() immunoglobulin production / Defective CSF2RB causes SMDP5 / Defective CSF2RA causes SMDP4 / positive regulation of B cell activation / respiratory gaseous exchange by respiratory system / Surfactant metabolism / granulocyte macrophage colony-stimulating factor receptor complex / granulocyte-macrophage colony-stimulating factor signaling pathway / humoral immune response mediated by circulating immunoglobulin / early endosome to late endosome transport ...immunoglobulin production / Defective CSF2RB causes SMDP5 / Defective CSF2RA causes SMDP4 / positive regulation of B cell activation / respiratory gaseous exchange by respiratory system / Surfactant metabolism / granulocyte macrophage colony-stimulating factor receptor complex / granulocyte-macrophage colony-stimulating factor signaling pathway / humoral immune response mediated by circulating immunoglobulin / early endosome to late endosome transport / phagocytosis, recognition / interleukin-5-mediated signaling pathway / positive regulation of leukocyte proliferation / positive regulation of type IIa hypersensitivity / regulation of proteolysis / positive regulation of type I hypersensitivity / cellular response to interleukin-3 / interleukin-3-mediated signaling pathway / immunoglobulin complex / antibody-dependent cellular cytotoxicity / cytokine receptor activity / phagocytosis, engulfment / endosome to lysosome transport / positive regulation of endocytosis / antigen processing and presentation / cell surface receptor signaling pathway via JAK-STAT / Interleukin-3, Interleukin-5 and GM-CSF signaling / immunoglobulin mediated immune response / Interleukin receptor SHC signaling / coreceptor activity / positive regulation of phagocytosis / immunoglobulin complex, circulating / immunoglobulin receptor binding / multivesicular body / complement activation, classical pathway / antigen binding / response to bacterium / cytokine-mediated signaling pathway / positive regulation of immune response / signaling receptor activity / antibacterial humoral response / RAF/MAP kinase cascade / adaptive immune response / response to lipopolysaccharide / blood microparticle / immune response / external side of plasma membrane / signal transduction / extracellular space / extracellular exosome / plasma membrane Similarity search - Function | ||||||
Biological species | ![]() ![]() ![]() | ||||||
Method | ![]() ![]() | ||||||
![]() | Rossjohn, J. / McKinstry, W.J. / Woodcock, J.M. / McClure, B.J. / Hercus, T.R. / Parker, M.W. / Lopez, A.F. / Bagley, C.J. | ||||||
![]() | ![]() Title: Structure of the activation domain of the GM-CSF/IL-3/IL-5 receptor common beta-chain bound to an antagonist. Authors: Rossjohn, J. / McKinstry, W.J. / Woodcock, J.M. / McClure, B.J. / Hercus, T.R. / Parker, M.W. / Lopez, A.F. / Bagley, C.J. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 116.1 KB | Display | ![]() |
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PDB format | ![]() | 92.1 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 409.5 KB | Display | ![]() |
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Full document | ![]() | 430.4 KB | Display | |
Data in XML | ![]() | 14.8 KB | Display | |
Data in CIF | ![]() | 22.9 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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Unit cell |
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Components
#1: Protein | Mass: 11991.282 Da / Num. of mol.: 1 / Fragment: DOMAIN 4 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() |
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#2: Antibody | Mass: 23589.877 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: MONOCLONAL ANTIBODY / Source: (natural) ![]() ![]() |
#3: Antibody | Mass: 23380.188 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Details: MONOCLONAL ANTIBODY / Source: (natural) ![]() ![]() |
#4: Sugar | ChemComp-NAG / |
#5: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.78 Å3/Da / Density % sol: 67.47 % | ||||||||||||||||||||||||||||||
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Crystal grow | Temperature: 295 K / Method: vapor diffusion, hanging drop / pH: 5.5 Details: 12% peg 4000, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 22K | ||||||||||||||||||||||||||||||
Crystal grow | *PLUS | ||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K |
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Diffraction source | Source: ![]() ![]() ![]() |
Detector | Type: OTHER / Detector: CCD / Date: May 1, 1999 |
Radiation | Protocol: SINGLE WAVELENGTH / Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Resolution: 2.8→30 Å / Num. all: 21211 / Num. obs: 21211 / % possible obs: 88.1 % / Observed criterion σ(F): 0 / Observed criterion σ(I): 0 / Redundancy: 2.8 % / Biso Wilson estimate: 85.6 Å2 / Rmerge(I) obs: 0.098 / Net I/σ(I): 11.4 |
Reflection shell | Resolution: 2.8→2.9 Å / Redundancy: 2 % / Rmerge(I) obs: 0.62 / Num. unique all: 2058 / % possible all: 87.9 |
Reflection | *PLUS Num. measured all: 58732 |
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Processing
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Refinement | Resolution: 2.8→30 Å / σ(F): 0 / σ(I): 0 / Stereochemistry target values: Engh & Huber
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Refinement step | Cycle: LAST / Resolution: 2.8→30 Å
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Refine LS restraints |
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Software | *PLUS Name: CNS / Classification: refinement | |||||||||||||||||||||
Refinement | *PLUS Highest resolution: 2.8 Å / Lowest resolution: 30 Å / σ(F): 0 / % reflection Rfree: 6 % / Rfactor obs: 0.228 | |||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||
Displacement parameters | *PLUS | |||||||||||||||||||||
Refine LS restraints | *PLUS
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