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- PDB-1e3j: Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly -
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Open data
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Basic information
Entry | Database: PDB / ID: 1e3j | ||||||
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Title | Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly | ||||||
![]() | NADP(H)-DEPENDENT KETOSE REDUCTASE | ||||||
![]() | OXIDOREDUCTASE / FRUCTOSE REDUCTION | ||||||
Function / homology | ![]() | ||||||
Biological species | ![]() | ||||||
Method | ![]() ![]() ![]() | ||||||
![]() | Banfield, M.J. / Salvucci, M.E. / Baker, E.N. / Smith, C.A. | ||||||
![]() | ![]() Title: Crystal Structure of Nadp(H)-Dependent Ketose Reductase from Besimia Argentifolii at 2.3 Angstrom Resolution Authors: Banfield, M.J. / Salvucci, M.E. / Baker, E.N. / Smith, C.A. #1: ![]() Title: Nadp-Dependent Bacterial Alcohol Dehydrogenases: Crystal Structure, Co-Factor-Binding and Co-Factor Specificity of the Adhs of Clostridium Beijerinckii and Thermoanaerobacter Brockii Authors: Korkhin, Y. / Kalb, A.J. / Peretz, M. / Bogin, O. / Burstein, Y. / Frolow, F. #2: Journal: J.Mol.Biol. / Year: 1976 Title: Nadp-Dependent Bacterial Alcohol Dehydrogenases: Crystal Structure, Co-Factor-Binding and Co-Factor Specificity of the Adhs of Clostridium Beijerinckii and Thermoanaerobacter Brockii Authors: Eklund, H. / Nordstrom, B. / Zeppezauer, E. / Soderlund, G. / Ohlsson, I. / Boiwe, T. / Soderberg, B.O. / Tapia, O. / Branden, C.I. | ||||||
History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 78.6 KB | Display | ![]() |
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PDB format | ![]() | 59.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 446.2 KB | Display | ![]() |
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Full document | ![]() | 449.1 KB | Display | |
Data in XML | ![]() | 14.9 KB | Display | |
Data in CIF | ![]() | 20.2 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: Protein | Mass: 38213.203 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() Production host: ![]() ![]() | ||||||
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#2: Chemical | #3: Chemical | ChemComp-PO4 / | #4: Chemical | ChemComp-BO3 / | #5: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 3.06 Å3/Da / Density % sol: 53.3 % | |||||||||||||||||||||||||
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Crystal grow | pH: 8.75 Details: 1.4M AMMONIUM SUPLHATE, 6% (V/V) GLYCERO 100MM BORIC ACID, PH8.75 | |||||||||||||||||||||||||
Crystal grow | *PLUS Temperature: 18 ℃ / Method: vapor diffusion | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 100 K | |||||||||||||||
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Diffraction source | Source: ![]() ![]() ![]() | |||||||||||||||
Detector | Type: ADSC QUANTUM / Detector: CCD / Date: Feb 15, 2000 / Details: MIRRORS | |||||||||||||||
Radiation | Monochromator: MIRRORS / Protocol: MAD / Monochromatic (M) / Laue (L): M / Scattering type: x-ray | |||||||||||||||
Radiation wavelength |
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Reflection | Resolution: 2.3→22 Å / Num. obs: 21214 / % possible obs: 97.5 % / Redundancy: 13.3 % / Biso Wilson estimate: 41.1 Å2 / Rmerge(I) obs: 0.049 / Net I/σ(I): 44.9 | |||||||||||||||
Reflection shell | Resolution: 2.3→2.4 Å / Redundancy: 11.3 % / Rmerge(I) obs: 0.205 / Mean I/σ(I) obs: 7.9 / % possible all: 95.5 | |||||||||||||||
Reflection | *PLUS Lowest resolution: 22 Å | |||||||||||||||
Reflection shell | *PLUS % possible obs: 95.5 % |
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Processing
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Refinement | Method to determine structure: ![]() Details: THE C-TERMINAL RESIDUE WAS NOT SEEN I THE DENSITY MAPS
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Solvent computation | Solvent model: FLAT MODEL / Bsol: 39.7918 Å2 / ksol: 0.314832 e/Å3 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | Biso mean: 49.5 Å2
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Refine analyze |
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Refinement step | Cycle: LAST / Resolution: 2.3→20 Å
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Refine LS restraints |
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LS refinement shell | Resolution: 2.3→2.44 Å / Rfactor Rfree error: 0.027 / Total num. of bins used: 6
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Software | *PLUS Name: CNS / Version: 1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS Rfactor Rfree: 0.25 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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LS refinement shell | *PLUS Lowest resolution: 2.38 Å / Rfactor Rfree: 0.345 / Rfactor obs: 0.27 |