+Open data
-Basic information
Entry | Database: PDB / ID: 1dsk | ||||||
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Title | NMR SOLUTION STRUCTURE OF VPR59_86, 20 STRUCTURES | ||||||
Components | VPR PROTEIN | ||||||
Keywords | VIRAL PEPTIDE / POLYPEPTIDE | ||||||
Function / homology | Function and homology information symbiont-mediated arrest of host cell cycle during G2/M transition / monoatomic ion transmembrane transport / virion component / protein homooligomerization / viral penetration into host nucleus / host cell / host extracellular space / symbiont entry into host cell / cell cycle / DNA-templated transcription ...symbiont-mediated arrest of host cell cycle during G2/M transition / monoatomic ion transmembrane transport / virion component / protein homooligomerization / viral penetration into host nucleus / host cell / host extracellular space / symbiont entry into host cell / cell cycle / DNA-templated transcription / host cell nucleus / regulation of DNA-templated transcription Similarity search - Function | ||||||
Biological species | Human immunodeficiency virus 1 | ||||||
Method | SOLUTION NMR | ||||||
Authors | Yao, S. / Torres, A.M. / Azad, A.A. / Macreadie, I.G. / Norton, R.S. | ||||||
Citation | Journal: J. Pept. Sci. / Year: 1998 Title: Solution structure of peptides from HIV-1 Vpr protein that cause membrane permeabilization and growth arrest. Authors: Yao, S. / Torres, A.M. / Azad, A.A. / Macreadie, I.G. / Norton, R.S. #1: Journal: Gene / Year: 1996 Title: Characterization of a leucine-zipper-like domain in Vpr protein of human immunodeficiency virus type 1. Authors: Wang, L. / Mukherjee, S. / Narayan, O. / Zhao, L.J. #2: Journal: Proc. Natl. Acad. Sci. U.S.A. / Year: 1995 Title: A domain of human immunodeficiency virus type 1 Vpr containing repeated H(S/F)RIG amino acid motifs causes cell growth arrest and structural defects. Authors: Macreadie, I.G. / Castelli, L.A. / Hewish, D.R. / Kirkpatrick, A. / Ward, A.C. / Azad, A.A. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1dsk.cif.gz | 197.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1dsk.ent.gz | 164 KB | Display | PDB format |
PDBx/mmJSON format | 1dsk.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1dsk_validation.pdf.gz | 338.9 KB | Display | wwPDB validaton report |
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Full document | 1dsk_full_validation.pdf.gz | 412.5 KB | Display | |
Data in XML | 1dsk_validation.xml.gz | 11.2 KB | Display | |
Data in CIF | 1dsk_validation.cif.gz | 18.7 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ds/1dsk ftp://data.pdbj.org/pub/pdb/validation_reports/ds/1dsk | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: Protein/peptide | Mass: 3353.068 Da / Num. of mol.: 1 / Fragment: RESIDUES 59 - 86 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Human immunodeficiency virus 1 / Genus: Lentivirus / References: UniProt: P12520 |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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-Sample preparation
Sample conditions | pH: 3.3 / Temperature: 298 K |
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Crystal grow | *PLUS Method: other / Details: NMR |
-Processing
Software |
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NMR software | Name: X-PLOR / Version: 3.1 / Developer: BRUNGER / Classification: refinement | ||||||||||||
NMR ensemble | Conformers submitted total number: 20 |