+Open data
-Basic information
Entry | Database: PDB / ID: 1djc | ||||||
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Title | STRUCTURE OF BETA-LACTAMASE PRECURSOR, S70A MUTANT, AT 120K | ||||||
Components | BETA-LACTAMASE | ||||||
Keywords | HYDROLASE / ANTIBIOTIC RESISTANCE / PLASMID / TRANSPOSABLE ELEMENT | ||||||
Function / homology | Function and homology information beta-lactam antibiotic catabolic process / beta-lactamase activity / beta-lactamase / response to antibiotic Similarity search - Function | ||||||
Biological species | Staphylococcus aureus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 2 Å | ||||||
Authors | Chen, C.C.H. / Herzberg, O. | ||||||
Citation | Journal: Biochemistry / Year: 1996 Title: Structure and kinetics of the beta-lactamase mutants S70A and K73H from Staphylococcus aureus PC1. Authors: Chen, C.C. / Smith, T.J. / Kapadia, G. / Wasch, S. / Zawadzke, L.E. / Coulson, A. / Herzberg, O. #1: Journal: Protein Eng. / Year: 1995 Title: An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase that Hydrolyses Third-Generation Cephalosporins Authors: Zawadzke, L.E. / Smith, T.J. / Herzberg, O. #2: Journal: J.Mol.Biol. / Year: 1992 Title: Inhibition of Beta-Lactamase by Clavulanate. Trapped Intermediates in Cryocrystallographic Studies Authors: Chen, C.C. / Herzberg, O. #3: Journal: J.Mol.Biol. / Year: 1991 Title: Refined Crystal Structure of Beta-Lactamase from Staphylococcus Aureus Pc1 at 2.0 Authors: Herzberg, O. #4: Journal: Science / Year: 1987 Title: Bacterial Resistance to Beta-Lactam Antibiotics. Crystal Structure of Beta-Lactamase from Staphylococcus Aureus Pc1 at 2.5 A Resolution Authors: Herzberg, O. / Moult, J. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1djc.cif.gz | 74.8 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1djc.ent.gz | 54.6 KB | Display | PDB format |
PDBx/mmJSON format | 1djc.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 1djc_validation.pdf.gz | 377.9 KB | Display | wwPDB validaton report |
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Full document | 1djc_full_validation.pdf.gz | 385.4 KB | Display | |
Data in XML | 1djc_validation.xml.gz | 7.7 KB | Display | |
Data in CIF | 1djc_validation.cif.gz | 13.4 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/dj/1djc ftp://data.pdbj.org/pub/pdb/validation_reports/dj/1djc | HTTPS FTP |
-Related structure data
-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Components on special symmetry positions |
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-Components
#1: Protein | Mass: 28827.211 Da / Num. of mol.: 1 / Mutation: S70A Source method: isolated from a genetically manipulated source Details: SOAKED WITH AMPICILLIN BUT DENSITY WAS UNINTERPRETABLE Source: (gene. exp.) Staphylococcus aureus (bacteria) / Strain: PC1 / Gene: BLAZ / Plasmid: PTS6 / Gene (production host): BLAZ Production host: SHUTTLE PLASMID FROM ESCHERICHIA COLI MC1061 TO STAPHYLOCOCCUS AUREUS RN4220 References: UniProt: P00807, beta-lactamase | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.82 Å3/Da / Density % sol: 61 % |
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Crystal grow | *PLUS Method: unknown |
-Data collection
Diffraction | Mean temperature: 120 K |
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Diffraction source | Wavelength: 1.5418 |
Detector | Type: SIEMENS / Detector: AREA DETECTOR / Date: Oct 17, 1991 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1.5418 Å / Relative weight: 1 |
Reflection | Num. obs: 19460 / % possible obs: 85 % / Observed criterion σ(I): 0 / Redundancy: 2.6 % / Rmerge(I) obs: 0.074 |
Reflection | *PLUS Highest resolution: 2 Å / Num. measured all: 50754 |
Reflection shell | *PLUS Highest resolution: 2 Å / Lowest resolution: 2.1 Å / % possible obs: 41 % / Num. unique obs: 1559 / Num. measured obs: 2702 / Rmerge(I) obs: 0.206 |
-Processing
Software |
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Refinement | Resolution: 2→8 Å / σ(F): 2 Details: THE CONTINUOUS DENSITY IN THE ACTIVE SITE HAS NOT BEEN INTERPRETED AND ONLY ONE WATER MOLECULE HAS BEEN ASSIGNED IN THAT REGION (HOH 2). THE PROTEIN WAS SOAKED WITH AMPICILLIN BUT DENSITY WAS UNINTERPRETABLE.
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Refinement step | Cycle: LAST / Resolution: 2→8 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |