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- PDB-1daq: SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRI... -
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Basic information
Entry | Database: PDB / ID: 1daq | ||||||
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Title | SOLUTION STRUCTURE OF THE TYPE I DOCKERIN DOMAIN FROM THE CLOSTRIDIUM THERMOCELLUM CELLULOSOME (MINIMIZED AVERAGE STRUCTURE) | ||||||
![]() | ENDOGLUCANASE SS | ||||||
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Function / homology | ![]() ![]() ![]() ![]() Similarity search - Function | ||||||
Biological species | ![]() ![]() | ||||||
Method | ![]() | ||||||
Model type details | minimized average | ||||||
![]() | Lytle, B.L. / Volkman, B.F. / Westler, W.M. / Heckman, M.P. / Wu, J.H.D. | ||||||
![]() | ![]() Title: Solution structure of a type I dockerin domain, a novel prokaryotic, extracellular calcium-binding domain. Authors: Lytle, B.L. / Volkman, B.F. / Westler, W.M. / Heckman, M.P. / Wu, J.H. #1: ![]() Title: Secondary Structure and Calcium-induced Folding of the Clostridium thermocellum Dockerin Domain Determined by NMR Spectroscopy Authors: Lytle, B.L. / Volkman, B.F. / Westler, W.M. / Wu, J.H.D. #2: ![]() Title: Involvement of Both Dockerin Subdomains in Assembly of the Clostridium thermocellum Cellulosome Authors: Lytle, B. / Wu, J.H.D. | ||||||
History |
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Remark 650 | HELIX DETERMINATION METHOD: AUTHOR-DETERMINED |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 33.4 KB | Display | ![]() |
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PDB format | ![]() | 22.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Arichive directory | ![]() ![]() | HTTPS FTP |
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-Related structure data
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Links
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Assembly
Deposited unit | ![]()
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NMR ensembles |
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Components
#1: Protein | Mass: 7858.770 Da / Num. of mol.: 1 / Fragment: TYPE I DOCKERIN DOMAIN (RESIDUES 673-741) Source method: isolated from a genetically manipulated source Source: (gene. exp.) ![]() ![]() ![]() ![]() ![]() References: UniProt: P38686, UniProt: P0C2S5*PLUS, ![]() |
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#2: Chemical |
-Experimental details
-Experiment
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NMR experiment |
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NMR details | Text: THIS STRUCTURE WAS DETERMINED BY STANDARD TECHNIQUES USING UNLABELED AND 15N- LABELED DOCKERIN. |
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Sample preparation
Details | Contents: 100MM POTASSIUM CHLORIDE; 20MM CALCIUM CHLORIDE; 90% H2O, 10% D2O | |||||||||||||||
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Sample conditions |
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Crystal grow![]() | *PLUS Method: other / Details: NMR |
-NMR measurement
NMR spectrometer |
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Processing
NMR software |
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Refinement | Method: torsion angle dynamics / Software ordinal: 1 Details: THE STRUCTURE IS BASED ON 728 NOE-DERIVED DISTANCE CONSTRAINTS, 79 DIHEDRAL ANGLE CONSTRAINTS, AND 12 CALCIUM ION RESTRAINTS. | ||||||||||||||||||||||||
NMR representative | Selection criteria: minimized average structure | ||||||||||||||||||||||||
NMR ensemble | Conformers submitted total number: 1 |