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- PDB-1d24: CRYSTAL AND MOLECULAR STRUCTURE OF A DNA DUPLEX CONTAINING THE CA... -
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Open data
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Basic information
Entry | Database: PDB / ID: 1d24 | ||||||||||||||||||
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Title | CRYSTAL AND MOLECULAR STRUCTURE OF A DNA DUPLEX CONTAINING THE CARCINOGENIC LESION O6-METHYLGUANINE | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / Z-DNA / DOUBLE HELIX / MODIFIED | Function / homology | DNA | ![]() Method | ![]() ![]() Ginell, S.L. / Kuzmich, S. / Jones, R.A. / Berman, H.M. | ![]() ![]() Title: Crystal and molecular structure of a DNA duplex containing the carcinogenic lesion O6-methylguanine. Authors: Ginell, S.L. / Kuzmich, S. / Jones, R.A. / Berman, H.M. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 16.3 KB | Display | ![]() |
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PDB format | ![]() | 10.4 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 379.4 KB | Display | ![]() |
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Full document | ![]() | 384.2 KB | Display | |
Data in XML | ![]() | 4.6 KB | Display | |
Data in CIF | ![]() | 5.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 |
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Unit cell |
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Components
#1: DNA chain | Mass: 1824.232 Da / Num. of mol.: 2 / Source method: obtained synthetically #2: Water | ChemComp-HOH / | |
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-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 1.66 Å3/Da / Density % sol: 25.93 % | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Crystal grow | Method: vapor diffusion / pH: 7 / Details: pH 7.00, VAPOR DIFFUSION / Temp details: ROOM TEMPERATURE | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions |
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Crystal grow | *PLUS pH: 7 / Method: vapor diffusion | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction | Mean temperature: 183 K |
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Diffraction source | Source: ![]() |
Detector | Type: SIEMENS-NICOLET / Detector: AREA DETECTOR |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 1.9 Å / Num. all: 1597 / Num. obs: 1246 / Observed criterion σ(I): 0 / Rmerge(I) obs: 0.0693 |
Reflection | *PLUS Highest resolution: 1.9 Å / Num. all: 5557 / Num. obs: 1597 / Observed criterion σ(I): 0 / Rmerge(I) obs: 0.0693 / Num. measured all: 1246 |
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Processing
Software | Name: NUCLSQ / Classification: refinement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.9→8 Å /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 1.9→8 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.9 Å / Lowest resolution: 8 Å / Rfactor obs: 0.19 / Num. reflection obs: 1217 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |