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Yorodumi- PDB-1cpr: ST. LOUIS CYTOCHROME C' FROM THE PURPLE PHOTOTROPIC BACTERIUM, RH... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1cpr | ||||||
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Title | ST. LOUIS CYTOCHROME C' FROM THE PURPLE PHOTOTROPIC BACTERIUM, RHODOBACTER CAPSULATUS | ||||||
Components | CYTOCHROME C' | ||||||
Keywords | ELECTRON TRANSPORT / HEME PROTEIN / CYTOCHROME | ||||||
Function / homology | Function and homology information electron transport chain / periplasmic space / electron transfer activity / iron ion binding / heme binding Similarity search - Function | ||||||
Biological species | Rhodobacter capsulatus (bacteria) | ||||||
Method | X-RAY DIFFRACTION / SYNCHROTRON / Resolution: 2.1 Å | ||||||
Authors | Tahirov, T.H. / Misaki, S. / Meyer, T.E. / Cusanovich, M.A. / Yasuoka, N. | ||||||
Citation | Journal: Acta Crystallogr.,Sect.D / Year: 1997 Title: Structure of cytochrome c' from Rhodobacter capsulatus strain St Louis: an unusual molecular association induced by bridging Zn ions. Authors: Tahirov, T.H. / Misaki, S. / Meyer, T.E. / Cusanovich, M.A. / Higuchi, Y. / Yasuoka, N. #1: Journal: J.Mol.Biol. / Year: 1996 Title: High-Resolution Crystal Structures of Two Polymorphs of Cytochrome C' from the Purple Phototrophic Bacterium Rhodobacter Capsulatus Authors: Tahirov, T.H. / Misaki, S. / Meyer, T.E. / Cusanovich, M.A. / Higuchi, Y. / Yasuoka, N. #2: Journal: Nat.Struct.Biol. / Year: 1996 Title: Concerted Movement of Side Chains in the Haem Vicinity Observed on Ligand Binding in Cytochrome C' from Rhodobacter Capsulatus Authors: Tahirov, T.H. / Misaki, S. / Meyer, T.E. / Cusanovich, M.A. / Higuchi, Y. / Yasuoka, N. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1cpr.cif.gz | 32.7 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1cpr.ent.gz | 25.7 KB | Display | PDB format |
PDBx/mmJSON format | 1cpr.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/cp/1cpr ftp://data.pdbj.org/pub/pdb/validation_reports/cp/1cpr | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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-Components
#1: Protein | Mass: 13140.707 Da / Num. of mol.: 1 / Source method: isolated from a natural source / Source: (natural) Rhodobacter capsulatus (bacteria) / Strain: ST. LOUIS / References: UniProt: P00147 | ||||
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#2: Chemical | ChemComp-ZN / #3: Chemical | ChemComp-HEM / | #4: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.69 Å3/Da / Density % sol: 51 % | |||||||||||||||||||||||||
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Crystal grow | *PLUS pH: 6.5 / Method: vapor diffusion, sitting drop | |||||||||||||||||||||||||
Components of the solutions | *PLUS
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-Data collection
Diffraction source | Source: SYNCHROTRON / Site: Photon Factory / Beamline: BL-6A / Wavelength: 1 |
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Detector | Type: FUJI / Detector: IMAGE PLATE / Date: Dec 19, 1995 |
Radiation | Monochromatic (M) / Laue (L): M / Scattering type: x-ray |
Radiation wavelength | Wavelength: 1 Å / Relative weight: 1 |
Reflection | Num. obs: 6988 / % possible obs: 85.2 % / Observed criterion σ(I): -3 / Redundancy: 3.88 % / Rmerge(I) obs: 0.08 |
Reflection | *PLUS Highest resolution: 2.1 Å / Lowest resolution: 30 Å / Num. measured all: 27125 |
Reflection shell | *PLUS Highest resolution: 2.1 Å / Lowest resolution: 2.18 Å / % possible obs: 66.4 % / Rmerge(I) obs: 0.19 |
-Processing
Software |
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Refinement | Resolution: 2.1→6 Å / σ(F): 2 /
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Displacement parameters | Biso mean: 21.99 Å2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refinement step | Cycle: LAST / Resolution: 2.1→6 Å
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Refine LS restraints |
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Software | *PLUS Name: X-PLOR / Version: 2.1 / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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