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Open data
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Basic information
Entry | Database: PDB / ID: 1bd1 | ||||||||||||||||||
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Title | CRYSTALLOGRAPHIC STUDY OF ONE TURN OF G/C-RICH B-DNA | ||||||||||||||||||
![]() | DNA (5'-D(*![]() DNA / B-DNA / DOUBLE HELIX | Function / homology | TRIETHYLAMMONIUM ION / DNA | ![]() Method | ![]() ![]() Heinemann, U. | ![]() ![]() Title: Crystallographic study of one turn of G/C-rich B-DNA. Authors: Heinemann, U. / Alings, C. #1: ![]() Title: Structural Features of G/C-Rich DNA Going A or B Authors: Heinemann, U. / Alings, C. / Lauble, H. #2: ![]() Title: X-Ray Studies of DNA Aiming at Elucidating the Sequence-Structure Code Authors: Heinemann, U. / Alings, C. / Lauble, H. History |
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Structure visualization
Structure viewer | Molecule: ![]() ![]() |
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Downloads & links
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Download
PDBx/mmCIF format | ![]() | 17.1 KB | Display | ![]() |
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PDB format | ![]() | 9.5 KB | Display | ![]() |
PDBx/mmJSON format | ![]() | Tree view | ![]() | |
Others | ![]() |
-Validation report
Summary document | ![]() | 378.3 KB | Display | ![]() |
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Full document | ![]() | 384.8 KB | Display | |
Data in XML | ![]() | 4.3 KB | Display | |
Data in CIF | ![]() | 5.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Similar structure data |
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Links
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Assembly
Deposited unit | ![]()
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1 | ![]()
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Unit cell |
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Components on special symmetry positions |
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Components
#1: DNA chain | Mass: 3045.992 Da / Num. of mol.: 1 / Source method: obtained synthetically | ||
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#2: Chemical | #3: Water | ChemComp-HOH / | |
-Experimental details
-Experiment
Experiment | Method: ![]() |
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Sample preparation
Crystal | Density Matthews: 2.09 Å3/Da / Density % sol: 41.21 % | ||||||||||||||||||||||||
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Crystal grow | Temperature: 277 K / Method: microdialysis / Details: MICRODIALYSIS, temperature 277.00K | ||||||||||||||||||||||||
Components of the solutions |
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-Data collection
Diffraction | Ambient temp details: ROOM TEMPERATURE |
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Diffraction source | Source: SEALED TUBE |
Detector | Detector: DIFFRACTOMETER |
Radiation | Scattering type: x-ray |
Radiation wavelength | Relative weight: 1 |
Reflection | Highest resolution: 1.4 Å / Num. obs: 3062 |
Reflection | *PLUS Highest resolution: 1.4 Å / Lowest resolution: 1.6 Å / Rmerge(I) obs: 0.038 |
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Processing
Software | Name: NUCLSQ / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Resolution: 1.6→10 Å / σ(F): 3 /
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Refine Biso |
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Refinement step | Cycle: LAST / Resolution: 1.6→10 Å
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Refine LS restraints |
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Refinement | *PLUS Highest resolution: 1.6 Å / Lowest resolution: 10 Å / σ(F): 3 / Rfactor obs: 0.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS |