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- PDB-1acx: ACTINOXANTHIN STRUCTURE AT THE ATOMIC LEVEL (RUSSIAN) -

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Entry
Database: PDB / ID: 1acx
TitleACTINOXANTHIN STRUCTURE AT THE ATOMIC LEVEL (RUSSIAN)
ComponentsACTINOXANTHIN
KeywordsANTIBACTERIAL PROTEIN
Function / homology
Function and homology information


defense response to bacterium / DNA binding
Similarity search - Function
Neocarzinostatin-like / Neocarzinostatin family / Neocarzinostatin family / Neocarzinostatin-like / Immunoglobulin-like / Sandwich / Mainly Beta
Similarity search - Domain/homology
Biological speciesStreptomyces globisporus (bacteria)
MethodX-RAY DIFFRACTION / Resolution: 2 Å
AuthorsPletnev, V.Z. / Kuzin, A.P.
Citation
Journal: Bioorg.Khim. / Year: 1982
Title: Actinoxanthin Structure at the Atomic Level (Russian)
Authors: Pletnev, V.Z. / Kuzin, A.P. / Malinina, L.V.
#1: Journal: Chemistry of Peptides and Proteins / Year: 1982
Title: X-Ray Investigation of Three Dimensional Structure of Actinoxanthin
Authors: Pletnev, V. / Kuzin, A. / Trakhanov, S. / Popovich, V. / Tsigannik, I.
#2: Journal: Biopolymers / Year: 1982
Title: Three-Dimensional Structure of Actinoxanthin. Iv. A 2.5-Angstroms Resolution
Authors: Pletnev, V.Z. / Kuzin, A.P. / Trakhanov, S.D. / Kostetsky, P.V.
#3: Journal: Biopolymers / Year: 1981
Title: Three-Dimensional Structure of Actinoxanthin. III. A 4-Angstroms Resolution
Authors: Pletnev, V.Z. / Kuzin, A.P. / Trakhanov, S.D. / Kostetsky, P.V. / Popovich, V.A. / Tsigannik, I.N.
#4: Journal: Kristallografiya / Year: 1981
Title: X-Ray Diffraction Studies of Actinoxanthine at High Resolution (Russian)
Authors: Pletnev, V.Z. / Kuzin, A.P. / Trakhanov, S.D. / Khokhlov, A.S. / Ovchinnikov, Yu.A.
#5: Journal: Sov.Phys.Crystallogr.(Engl.Transl.) / Year: 1982
Title: High Resolution X-Ray Structural Investigation of Actinoxanthin
Authors: Pletnev, V.Z. / Kuzin, A.P. / Trakhanov, S.D. / Khokhlov, A.S. / Ovchinnikov, Yu.A.
#6: Journal: Antibiotiki(Moscow) / Year: 1981
Title: Effect of Actinoxanthine, an Antitumor Antibiotic on Cells Cultivated in Vitro
Authors: Borodina, V.M. / Kiryanova, E.A. / Zelenin, A.V. / Reshetov, P.D. / Chupova, L.A.
#7: Journal: Bioorg.Khim. / Year: 1981
Title: Actinoxanthine Structure in Crystal and Aqueous Solution (Russian)
Authors: Nabiev, I.R. / Trakhanov, S.D. / Pletnev, V.Z. / Efremov, E.S.
#8: Journal: Bioorg.Khim. / Year: 1980
Title: Three Dimensional Structure of Actinoxanthin. II. The Location of Heavy Atom Sites in Isomorphous Derivatives by X-Ray Direct Methods (Russian)
Authors: Pletnev, V.Z. / Kuzin, A.P. / Trakhanov, S.D. / Popovich, V.A. / Tsigannik, I.N.
#9: Journal: Sov.J.Bioorg.Chem.(Engl.Transl.) / Year: 1981
Title: The Spatial Structure of Actinoxanthin. II. Localization of the Heavy Atoms in Isomorphic Derivatives by Direct X-Ray Methods
Authors: Pletnev, V.Z. / Kuzin, A.P. / Trakhanov, S.D. / Popovich, V.A. / Tsygannik, I.N.
#10: Journal: Bioorg.Khim. / Year: 1980
Title: Three-Dimensional Structure of Actinoxanthine at 2.8 Angstroms Resolution (Russian)
Authors: Pletnev, V.Z. / Kuzin, A.P. / Trakhanov, S.D.
#11: Journal: Bioorg.Khim. / Year: 1979
Title: Three-Dimensional Structure of Actinoxanthine. I. Crystallization and Preliminary X-Ray Data (Russian)
Authors: Pletnev, V.Z. / Trakhanov, S.D. / Tsigannik, I.N.
#12: Journal: Sov.J.Bioorg.Chem.(Engl.Transl.) / Year: 1980
Title: Three-Dimensional Structure of Actinoxanthin. I. Crystallization and Preliminary X-Ray Structural Results
Authors: Pletnev, V.Z. / Trakhanov, S.D. / Tsygannik, I.N.
#13: Journal: J.Antibiot. / Year: 1976
Title: Chemical Studies on Actinoxanthin
Authors: Khokhlov, A.S. / Reshetov, P.D. / Chupova, L.A. / Cherches, B.Z. / Zhigis, L.S. / Stoyachenko, I.A.
#14: Journal: Bioorg.Khim. / Year: 1976
Title: Actinoxanthin. Vii. Location of Disulfide Bonds in Actinoxanthin (Russian)
Authors: Zhigis, L.S. / Stoyachenko, I.A. / Cherches, B.Z. / Reshetov, P.D. / Khokhlov, A.S.
#15: Journal: Sov.J.Bioorg.Chem.(Engl.Transl.) / Year: 1976
Title: Actinoxanthin. Vii. Determination of the Positions of the Disulfide Bonds
Authors: Zhigis, L.S. / Stoyachenko, I.A. / Cherches, B.Z. / Reshetov, P.D. / Khokhlov, A.S.
#16: Journal: Bioorg.Khim. / Year: 1975
Title: Actinoxanthin. Vi. Tryptic Peptides and Amino Acid Sequence of Actinoxanthin (Russian)
Authors: Cherches, B.Z. / Reshetov, P.D. / Gjigis, L.S. / Stoyachenko, I.A. / Chupova, L.A. / Khokhlov, A.S.
#17: Journal: Sov.J.Bioorg.Chem.(Engl.Transl.) / Year: 1976
Title: Actinoxanthin. Vi. Peptides of Tryptic Hydrolysis. Amino-Acid Sequence of Actinoxanthin
Authors: Cherches, B.Z. / Reshetov, P.D. / Zhigis, L.S. / Stoyachenko, I.A. / Chupova, L.A. / Khokhlov, A.S.
#18: Journal: Bioorg.Khim. / Year: 1975
Title: Actinoxanthin. V. Thermolytic Peptides of Actinoxanthin (Russian)
Authors: Reshetov, P.D. / Gjigis, L.S. / Stoyachenko, I.A. / Khokhlov, A.S.
#19: Journal: Sov.J.Bioorg.Chem.(Engl.Transl.) / Year: 1976
Title: Actinoxanthin. V. The Peptides of a Thermolysin Hydrolyzate of Actinoxanthin
Authors: Reshetov, P.D. / Zhigis, L.S. / Stoyachenko, I.A. / Khokhlov, A.S.
#20: Journal: Bioorg.Khim. / Year: 1975
Title: Actinovanthin. Iv. Chymotryptic Peptides of Actinoxanthin (Russian)
Authors: Chupova, L.A. / Reshetov, P.D. / Khokhlov, A.S.
#21: Journal: Sov.J.Bioorg.Chem.(Engl.Transl.) / Year: 1976
Title: Actinoxanthin. Iv. Peptides of a Chymotryptic Hydrolysate of Actinoxanthin
Authors: Chupova, L.A. / Reshetov, P.D. / Khokhlov, A.S.
History
DepositionDec 17, 1982Processing site: BNL
Revision 1.0Mar 9, 1983Provider: repository / Type: Initial release
Revision 1.1Mar 24, 2008Group: Version format compliance
Revision 1.2Jul 13, 2011Group: Version format compliance
Revision 1.3Nov 29, 2017Group: Derived calculations / Other / Category: pdbx_database_status / struct_conf / Item: _pdbx_database_status.process_site

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Structure visualization

Structure viewerMolecule:
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Assembly

Deposited unit
A: ACTINOXANTHIN


Theoretical massNumber of molelcules
Total (without water)10,3321
Polymers10,3321
Non-polymers00
Water0
1


  • Idetical with deposited unit
  • defined by author
TypeNameSymmetry operationNumber
identity operation1_555x,y,z1
Unit cell
Length a, b, c (Å)30.900, 48.800, 64.100
Angle α, β, γ (deg.)90.00, 90.00, 90.00
Int Tables number19
Space group name H-MP212121
Atom site foot note1: SEE REMARK 5.

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Components

#1: Protein ACTINOXANTHIN


Mass: 10332.118 Da / Num. of mol.: 1
Source method: isolated from a genetically manipulated source
Source: (gene. exp.) Streptomyces globisporus (bacteria) / References: UniProt: P01551
Compound detailsTHE TYPE CLASSIFICATION SUPPLIED ON THE TURN RECORDS BELOW FOLLOWS THE NOTATION OF C. M. ...THE TYPE CLASSIFICATION SUPPLIED ON THE TURN RECORDS BELOW FOLLOWS THE NOTATION OF C. M. VENKATACHALAM (BIOPOLYMERS 6, 1425 (1968)).

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Experimental details

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Experiment

ExperimentMethod: X-RAY DIFFRACTION

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Sample preparation

CrystalDensity Matthews: 2.34 Å3/Da / Density % sol: 47.38 %

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Data collection

RadiationScattering type: x-ray
Radiation wavelengthRelative weight: 1

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Processing

SoftwareName: REAL-SPACE / Version: REFINEMENT / Classification: refinement
RefinementHighest resolution: 2 Å
Refinement stepCycle: LAST / Highest resolution: 2 Å
ProteinNucleic acidLigandSolventTotal
Num. atoms721 0 0 0 721

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