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Yorodumi- PDB-132d: SOLUTION STRUCTURE OF THE TN AN DNA DUPLEX GCCGTTAACGGC CONTAININ... -
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-Basic information
Entry | Database: PDB / ID: 132d | ||||||||||||||||||
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Title | SOLUTION STRUCTURE OF THE TN AN DNA DUPLEX GCCGTTAACGGC CONTAINING THE HPA I RESTRICTION SITE | ||||||||||||||||||
Components | DNA (5'-D(P*Keywords | DNA / DOUBLE HELIX / HPA 1 RESTRICTION SITE | Function / homology | DNA / DNA (> 10) | Function and homology information Method | SOLUTION NMR / distance geometry | Authors | Kim, S.-G. / Reid, B.R. | Citation | Journal: Biochemistry / Year: 1992 | Title: Solution structure of the TnAn DNA duplex GCCGTTAACGCG containing the HpaI restriction site. Authors: Kim, S.G. / Reid, B.R. History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 132d.cif.gz | 24.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb132d.ent.gz | 15.5 KB | Display | PDB format |
PDBx/mmJSON format | 132d.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Summary document | 132d_validation.pdf.gz | 236.3 KB | Display | wwPDB validaton report |
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Full document | 132d_full_validation.pdf.gz | 236 KB | Display | |
Data in XML | 132d_validation.xml.gz | 2.7 KB | Display | |
Data in CIF | 132d_validation.cif.gz | 3.3 KB | Display | |
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/32/132d ftp://data.pdbj.org/pub/pdb/validation_reports/32/132d | HTTPS FTP |
-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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NMR ensembles |
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-Components
#1: DNA chain | Mass: 3663.392 Da / Num. of mol.: 2 / Source method: obtained synthetically / Details: chemically synthesized Compound details | THE DNA DODECAMER CONTAINS THE HPA I RESTRICTIO | |
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-Experimental details
-Experiment
Experiment | Method: SOLUTION NMR |
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NMR experiment | Type: 2D NOESY |
NMR details | Text: 2-D NMR SPECTRA WERE USED |
-Sample preparation
Crystal grow | *PLUS Method: other / Details: NMR |
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-Processing
NMR software | Name: DSPACE / Developer: Hare Research, Inc. / Classification: refinement |
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Refinement | Method: distance geometry / Software ordinal: 1 Details: NOE DISTANCE CONSTRAINTS. THE R VALUE IS 0.18 FOR 80 INTERPROTON DISTANCES. |
NMR ensemble | Conformers calculated total number: 1 / Conformers submitted total number: 1 |