[English] 日本語
![](img/lk-miru.gif)
- EMDB-7240: Single-Molecule 3D Image of DNA Origami Bennett Linkage by Indivi... -
+
Open data
-
Basic information
Entry | Database: EMDB / ID: EMD-7240 | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Single-Molecule 3D Image of DNA Origami Bennett Linkage by Individual Particle Electron Tomography (No. 025) | |||||||||||||||
![]() | primary map | |||||||||||||||
![]() |
| |||||||||||||||
Biological species | ![]() | |||||||||||||||
Method | electron tomography / cryo EM / negative staining / Resolution: 130.0 Å | |||||||||||||||
![]() | Lei D / Marras A / Liu J / Huang C / Zhou L / Castro C / Su H / Ren G | |||||||||||||||
Funding support | ![]()
| |||||||||||||||
![]() | ![]() Title: Three-dimensional structural dynamics of DNA origami Bennett linkages using individual-particle electron tomography. Authors: Dongsheng Lei / Alexander E Marras / Jianfang Liu / Chao-Min Huang / Lifeng Zhou / Carlos E Castro / Hai-Jun Su / Gang Ren / ![]() Abstract: Scaffolded DNA origami has proven to be a powerful and efficient technique to fabricate functional nanomachines by programming the folding of a single-stranded DNA template strand into three- ...Scaffolded DNA origami has proven to be a powerful and efficient technique to fabricate functional nanomachines by programming the folding of a single-stranded DNA template strand into three-dimensional (3D) nanostructures, designed to be precisely motion-controlled. Although two-dimensional (2D) imaging of DNA nanomachines using transmission electron microscopy and atomic force microscopy suggested these nanomachines are dynamic in 3D, geometric analysis based on 2D imaging was insufficient to uncover the exact motion in 3D. Here we use the individual-particle electron tomography method and reconstruct 129 density maps from 129 individual DNA origami Bennett linkage mechanisms at ~ 6-14 nm resolution. The statistical analyses of these conformations lead to understanding the 3D structural dynamics of Bennett linkage mechanisms. Moreover, our effort provides experimental verification of a theoretical kinematics model of DNA origami, which can be used as feedback to improve the design and control of motion via optimized DNA sequences and routing. | |||||||||||||||
History |
|
-
Structure visualization
Movie |
![]() |
---|---|
Structure viewer | EM map: ![]() ![]() ![]() |
Supplemental images |
-
Downloads & links
-EMDB archive
Map data | ![]() | 25 MB | ![]() | |
---|---|---|---|---|
Header (meta data) | ![]() ![]() | 11.7 KB 11.7 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 6.8 KB | Display | ![]() |
Images | ![]() | 21.2 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 78 KB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 77.1 KB | Display | |
Data in XML | ![]() | 495 B | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7155C ![]() 7156C ![]() 7157C ![]() 7158C ![]() 7159C ![]() 7160C ![]() 7161C ![]() 7162C ![]() 7163C ![]() 7164C ![]() 7165C ![]() 7166C ![]() 7167C ![]() 7168C ![]() 7169C ![]() 7170C ![]() 7171C ![]() 7172C ![]() 7173C ![]() 7174C ![]() 7175C ![]() 7176C ![]() 7177C ![]() 7178C ![]() 7179C ![]() 7180C ![]() 7181C ![]() 7182C ![]() 7183C ![]() 7184C ![]() 7185C ![]() 7186C ![]() 7187C ![]() 7188C ![]() 7189C ![]() 7190C ![]() 7191C ![]() 7192C ![]() 7193C ![]() 7194C ![]() 7195C ![]() 7196C ![]() 7197C ![]() 7198C ![]() 7199C ![]() 7200C ![]() 7201C ![]() 7202C ![]() 7203C ![]() 7204C ![]() 7205C ![]() 7206C ![]() 7207C ![]() 7208C ![]() 7209C ![]() 7210C ![]() 7211C ![]() 7212C ![]() 7213C ![]() 7214C ![]() 7215C ![]() 7216C ![]() 7217C ![]() 7218C ![]() 7219C ![]() 7220C ![]() 7221C ![]() 7222C ![]() 7223C ![]() 7224C ![]() 7225C ![]() 7226C ![]() 7227C ![]() 7228C ![]() 7229C ![]() 7230C ![]() 7231C ![]() 7232C ![]() 7233C ![]() 7234C ![]() 7235C ![]() 7236C ![]() 7237C ![]() 7238C |
---|