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- EMDB-69543: Cryo-EM structure of the dimeric WDR11-FAM91A1-C17orf75 complex (... -

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Basic information

Entry
Database: EMDB / ID: EMD-69543
TitleCryo-EM structure of the dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)
Map data
Sample
  • Complex: dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)
Keywordsdimeric WDR11-FAM91A1-C17orf75 complex / PROTEIN TRANSPORT
Biological speciesHomo sapiens (human)
Methodsingle particle reconstruction / cryo EM / Resolution: 2.88 Å
AuthorsLiu ZM / Zhang YF / Chen ZY / Chen ZG / Ding JP
Funding support China, 4 items
OrganizationGrant numberCountry
National Natural Science Foundation of China (NSFC)32071190 China
National Natural Science Foundation of China (NSFC)32571391 China
Ministry of Science and Technology (MoST, China)2020YFA0509000 China
Ministry of Science and Technology (MoST, China)2020YFA0803200 China
CitationJournal: Structure / Year: 2026
Title: Cryo-EM structure of the dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)
Authors: Liu ZM / Zhang YF / Chen ZY / Chen ZG / Ding JP
History
DepositionMar 4, 2026-
Header (metadata) releaseJul 29, 2026-
Map releaseJul 29, 2026-
UpdateJul 29, 2026-
Current statusJul 29, 2026Processing site: PDBc / Status: Released

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Structure visualization

Supplemental images

emd_69543.png

Downloads & links

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Map

FileDownload / File: emd_69543.map.gz / Format: CCP4 / Size: 824 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
0.93 Å/pix.
x 600 pix.
= 559.2 Å		0.93 Å/pix.
x 600 pix.
= 559.2 Å		0.93 Å/pix.
x 600 pix.
= 559.2 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 0.932 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 1.0
Minimum - Maximum-0.17886426 - 21.258759000000001
Average (Standard dev.)-0.036352344 (±0.22511092)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions600600600
Spacing600600600
CellA=B=C: 559.2 Å
α=β=γ: 90.0 °

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Supplemental data

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Additional map: raw map

Fileemd_69543_additional_1.map
Annotationraw map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: #2

Fileemd_69543_half_map_1.map
Projections & Slices
AxesZYX

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Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: #1

Fileemd_69543_half_map_2.map
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Sample components

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Entire : dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)

EntireName: dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)
Components
  • Complex: dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)

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Supramolecule #1: dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)

SupramoleculeName: dimeric WDR11-FAM91A1-C17orf75 complex (focused on body1)
type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#3
Source (natural)Organism: Homo sapiens (human)

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 7.4
VitrificationCryogen name: ETHANE / Instrument: FEI VITROBOT MARK IV

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: FEI FALCON IV (4k x 4k) / Average electron dose: 50.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 3.0 µm / Nominal defocus min: 1.0 µm
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

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Image processing

CTF correctionType: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: NONE
Final reconstructionResolution.type: BY AUTHOR / Resolution: 2.88 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC / Number images used: 190979
Initial angle assignmentType: PROJECTION MATCHING
Final angle assignmentType: PROJECTION MATCHING
FSC plot (resolution estimation)

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