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Open data
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Basic information
Entry | ![]() | ||||||||||||||||||
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Title | HBx R96E fused DDB1 4M mutant | ||||||||||||||||||
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![]() | HBV / complex / VIRAL PROTEIN | ||||||||||||||||||
Biological species | ![]() | ||||||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.35 Å | ||||||||||||||||||
![]() | Tanaka H / Kita S / Sasaki M / Maenaka K / Machida S | ||||||||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Structural basis of the Hepatitis B virus x protein complexed with DDB1 Authors: Tanaka H / Dias JD / Jay B / Kita S / Sasaki M / Mizokami M / Neuveut C / Sumikama T / Shibata M / Maenaka K / Machida S | ||||||||||||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 8.8 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 15.1 KB 15.1 KB | Display Display | ![]() |
Images | ![]() | 70.8 KB | ||
Filedesc metadata | ![]() | 5.5 KB | ||
Others | ![]() ![]() | 98.3 MB 98.4 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||||||||||||||||||
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Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 0.67 Å | ||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #1
File | emd_63366_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_63366_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : the complex of HBx and DDB1
Entire | Name: the complex of HBx and DDB1 |
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Components |
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-Supramolecule #1: the complex of HBx and DDB1
Supramolecule | Name: the complex of HBx and DDB1 / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: ![]() |
-Macromolecule #1: Protein X, DNA damage-binding protein 1
Macromolecule | Name: Protein X, DNA damage-binding protein 1 / type: protein_or_peptide / ID: 1 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() |
Recombinant expression | Organism: ![]() |
Sequence | String: MASAWSHPQF EKGSGSGMAA RLYCQLDPSR DVLCLRPVGA ESRGRPLSGP LGTLSSPSPS AVPADHGAHL SLRGLPVCAF SSAGPCALRF TSARCMETTV NAHQILPKVL HKETLGLPAM STTDLEAYFK DCVFKDWEEL GEEIRLKVFV LGGCRHKLVC APAPCNFFTS ...String: MASAWSHPQF EKGSGSGMAA RLYCQLDPSR DVLCLRPVGA ESRGRPLSGP LGTLSSPSPS AVPADHGAHL SLRGLPVCAF SSAGPCALRF TSARCMETTV NAHQILPKVL HKETLGLPAM STTDLEAYFK DCVFKDWEEL GEEIRLKVFV LGGCRHKLVC APAPCNFFTS ASGSGSGSGS GSGMSYNYVV TAQKPTAVNG CVTGHFTSAE DLNLLIAKNT RLEIYVVTAE GLRPVKEVGM YGKIAVMELF RPKGESKDLL FILTAKYNAC ILEYKQSGES IDIITRAHGN VQDRIGRPSE TGIIGIIDPE CRMIGLRLYD GLFKVIPLDR DNKELKAFNI RLEELHVIDV KFLYGCQAPT ICFVYQDPQG RHVKTYEVSL REKEFNKGPW KQENVEAEAS MVIAVPEPFG GAIIIGQESI TYHNGDKYLA IAPPIIKQST IVCHNRVDPN GSRYLLGDME GRLFMLLLEK EEQMDGTVTL KDLRVELLGE TSIAECLTYL DNGVVFVGSR LGDSQLVKLN VDSNEQGSYV VAMETFTNLG PIVDMCVVDL ERQGQGQLVT CSGAFKEGSL RIIRNGIGIH EHDSIDLPGI KGLWPLRSDP NRETDDTLVL SFVGQTRVLM LNGEEVEETE LMGFVDDQQT FFCGNVAHQQ LIQITSASVR LVSQEPKALV SEWKEPQAKN ISVASCNSSQ VVVAVGRALY YLQIHPQELR QISHTEMEHE VACLDITPLG DSNGLSPLCA IGLKTDISAR ILKLPSFELL HKEMLGGEID PESILMTTFE SSHYLLCALG DGALFYFGLN IETGLLSDRK KVTLGTQPTV LRTFRSLSTT NVFACSDRPT VIYSSNHKLV FSNVNLKEVN YMCPLNSDGY PDSLALANNS TLTIGTIDEI QKLHIRTVPL YESPRKICYQ EVSQCFGVLS SRIEVQDTSG GTTALRPSAS TQALSSSVSS SKLFSSSTAP HETSFGEEVE VHNLLIIDQH TFEVLHAHQF LQNEYALSLV SCKLGKDPNT YFIVGTAMVY PEEAEPKQGR IVVFQYSDGK LQTVAEKEVK GAVYSMVEFN GKLLASINST VRLYEWTTEK ELRTECNHYN NIMALYLKTK GDFILVGDLM RSVLLLAYKP MEGNFEEIAR DFNPNWMSAV EILDDDNFLG AENAFNLFVC QKDSAATTDE ERQHLQEVGL FHLGEFVNVF CHGSLVMQNL GETSTPTQGS VLFGTVNGMI GLVTSLSESW YNLLLDMQNR LNKVIKSVGK IEHSFWRSFH TERKTEPATG FIDGDLIESF LDISRPKMQE VVANLQYDDG SGMKREATAD DLIKVVEELT RIH |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.5 |
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Vitrification | Cryogen name: ETHANE / Instrument: LEICA EM GP |
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Electron microscopy
Microscope | TFS KRIOS |
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Specialist optics | Energy filter - Name: GIF Bioquantum / Energy filter - Slit width: 20 eV |
Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 49.6 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.4 µm / Nominal defocus min: 0.8 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |