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- EMDB-54078: Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL... -

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Basic information

Entry
Database: EMDB / ID: EMD-54078
TitleStructure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2
Map dataFull map
Sample
  • Complex: BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6
    • Complex: Nucleosome core particle
      • Protein or peptide: x 4 types
      • DNA: x 2 types
    • Complex: BAF complex
      • Protein or peptide: x 8 types
    • Complex: OCT4/SOX2 heterodimer
      • Protein or peptide: x 2 types
KeywordsChromatin / remodeler / transcription / GENE REGULATION
Function / homology
Function and homology information


negative regulation of myeloid progenitor cell differentiation / Positive Regulation of CDH1 Gene Transcription / glial cell fate commitment / single stranded viral RNA replication via double stranded DNA intermediate / regulation of myofibroblast cell apoptotic process / Formation of the posterior neural plate / cell fate commitment involved in formation of primary germ layer / cardiac cell fate determination / POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation / Formation of the anterior neural plate ...negative regulation of myeloid progenitor cell differentiation / Positive Regulation of CDH1 Gene Transcription / glial cell fate commitment / single stranded viral RNA replication via double stranded DNA intermediate / regulation of myofibroblast cell apoptotic process / Formation of the posterior neural plate / cell fate commitment involved in formation of primary germ layer / cardiac cell fate determination / POU5F1 (OCT4), SOX2, NANOG repress genes related to differentiation / Formation of the anterior neural plate / positive regulation of glucose mediated signaling pathway / endodermal-mesodermal cell signaling / regulation of asymmetric cell division / endodermal cell fate specification / response to oxygen-glucose deprivation / adenohypophysis development / heart induction / negative regulation of cell cycle G1/S phase transition / POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation / Specification of primordial germ cells / Specification of the neural plate border / pituitary gland development / regulation of DNA strand elongation / positive regulation of telomere maintenance in response to DNA damage / positive regulation of norepinephrine uptake / Regulation of CDH1 Function / Regulation of MITF-M-dependent genes involved in extracellular matrix, focal adhesion and epithelial-to-mesenchymal transition / Formation of the polybromo-BAF (pBAF) complex / Formation of the canonical BAF (cBAF) complex / Formation of the non-canonical BAF (ncBAF) complex / positive regulation of cell-cell adhesion / Formation of the embryonic stem cell BAF (esBAF) complex / Formation of neuronal progenitor and neuronal BAF (npBAF and nBAF) / Transcriptional Regulation by MECP2 / positive regulation of transcription of nucleolar large rRNA by RNA polymerase I / Transcriptional regulation of pluripotent stem cells / neuronal stem cell population maintenance / Germ layer formation at gastrulation / bBAF complex / eye development / cellular response to cytochalasin B / neural retina development / npBAF complex / tissue regeneration / negative regulation of androgen receptor signaling pathway / nBAF complex / brahma complex / histone H3K14ac reader activity / EGR2 and SOX10-mediated initiation of Schwann cell myelination / blastocyst hatching / regulation of transepithelial transport / nucleosome array spacer activity / response to growth factor / hepatocyte differentiation / morphogenesis of a polarized epithelium / Formation of annular gap junctions / Formation of the dystrophin-glycoprotein complex (DGC) / structural constituent of postsynaptic actin cytoskeleton / GBAF complex / Gap junction degradation / Folding of actin by CCT/TriC / regulation of G0 to G1 transition / Cell-extracellular matrix interactions / protein localization to adherens junction / dense body / Tat protein binding / postsynaptic actin cytoskeleton / RNA polymerase I preinitiation complex assembly / Ino80 complex / Prefoldin mediated transfer of substrate to CCT/TriC / XY body / RSC-type complex / blastocyst formation / host-mediated activation of viral transcription / ATP-dependent chromatin remodeler activity / cellular response to fatty acid / regulation of nucleotide-excision repair / regulation of double-strand break repair / Adherens junctions interactions / RHOF GTPase cycle / adherens junction assembly / nucleosome disassembly / apical protein localization / germ cell nucleus / Sensory processing of sound by inner hair cells of the cochlea / Sensory processing of sound by outer hair cells of the cochlea / Interaction between L1 and Ankyrins / miRNA binding / tight junction / SWI/SNF complex / regulation of mitotic metaphase/anaphase transition / positive regulation of T cell differentiation / nuclear androgen receptor binding / apical junction complex / nuclear chromosome / negative regulation of neuron differentiation / positive regulation of double-strand break repair / spinal cord development / maintenance of blood-brain barrier / regulation of norepinephrine uptake
Similarity search - Function
SWI/SNF-like complex subunit BAF250a / SWI/SNF-like complex subunit BAF250/Osa / SWI/SNF-like complex subunit BAF250, C-terminal / SWI/SNF-like complex subunit BAF250/Osa / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 / SWIB domain / SWI complex, BAF60b domains / DPF1-3, N-terminal domain / SMARCC, SWIRM-associated domain / SMARCC, N-terminal ...SWI/SNF-like complex subunit BAF250a / SWI/SNF-like complex subunit BAF250/Osa / SWI/SNF-like complex subunit BAF250, C-terminal / SWI/SNF-like complex subunit BAF250/Osa / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 / SWIB domain / SWI complex, BAF60b domains / DPF1-3, N-terminal domain / SMARCC, SWIRM-associated domain / SMARCC, N-terminal / : / DPF1-3, N-terminal / SWIRM-associated domain at the N-terminal / SWIRM-associated domain at the C-terminal / MarR-like, BRCT and chromo domains module profile. / Transcription factor SOX / SOX transcription factor / : / SWI/SNF Subunit INI1, DNA binding domain / SWI/SNF complex subunit BRG1 / Chromatin-remodeling complex component Sfh1/SNF5 / SMARCC, C-terminal / SWIRM-associated region 1 / : / SNF5/SMARCB1/INI1 / SNF5 / SMARCB1 / INI1 / POU-specific domain / POU domain / Pou domain - N-terminal to homeobox domain / POU-specific (POUs) domain signature 1. / POU-specific (POUs) domain signature 2. / POU-specific (POUs) domain profile. / Found in Pit-Oct-Unc transcription factors / : / BRK domain / BRK domain / BRK domain superfamily / domain in transcription and CHROMO domain helicases / Glutamine-Leucine-Glutamine, QLQ / QLQ / QLQ domain profile. / QLQ / Snf2-ATP coupling, chromatin remodelling complex / Snf2, ATP coupling domain / Snf2-ATP coupling, chromatin remodelling complex / domain in helicases and associated with SANT domains / HSA domain / ARID DNA-binding domain / ARID DNA-binding domain superfamily / ARID/BRIGHT DNA binding domain / ARID domain profile. / BRIGHT, ARID (A/T-rich interaction domain) domain / ARID/BRIGHT DNA binding domain / Helicase/SANT-associated domain / HSA domain profile. / SWIRM domain / SWIRM domain / SWIRM domain profile. / Homeobox, conserved site / SWIB/MDM2 domain / SWIB/MDM2 domain / SWIB/MDM2 domain profile. / 'Homeobox' domain signature. / SWIB/MDM2 domain superfamily / Homeodomain / 'Homeobox' domain profile. / Homeodomain / Homeobox domain / HMG (high mobility group) box / SANT domain profile. / Chromo/chromo shadow domain / Chromatin organization modifier domain / SANT domain / HMG boxes A and B DNA-binding domains profile. / high mobility group / High mobility group box domain / High mobility group box domain superfamily / Myb-like DNA-binding domain / : / SNF2-like, N-terminal domain superfamily / SNF2, N-terminal / SNF2-related domain / Lambda repressor-like, DNA-binding domain superfamily / SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains / SANT/Myb domain / zinc finger / PHD-finger / BRCT domain superfamily / Actins signature 1. / Actin, conserved site / Actins signature 2. / Zinc finger C2H2 type domain profile. / Actin/actin-like conserved site / Actins and actin-related proteins signature. / Green fluorescent protein, GFP / Zinc finger PHD-type signature. / Zinc finger C2H2 superfamily / Actin / Actin family / Actin
Similarity search - Domain/homology
AT-rich interactive domain-containing protein 1A / Actin-like protein 6A / Histone H2A type 1-B/E / Histone H2B type 1-J / Green fluorescent protein / Transcription factor SOX-2 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 / Actin, cytoplasmic 1 / Histone H4 / Histone H3.1 ...AT-rich interactive domain-containing protein 1A / Actin-like protein 6A / Histone H2A type 1-B/E / Histone H2B type 1-J / Green fluorescent protein / Transcription factor SOX-2 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 / Actin, cytoplasmic 1 / Histone H4 / Histone H3.1 / POU domain, class 5, transcription factor 1 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 / SWI/SNF complex subunit SMARCC2 / Zinc finger protein ubi-d4 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Similarity search - Component
Biological speciesHomo sapiens (human) / synthetic construct (others)
Methodsingle particle reconstruction / cryo EM / Resolution: 4.1 Å
AuthorsVecchia L / Weiss J / Cavadini S / Kempf G / Kater L / Pathare G / Thoma NH
Funding supportEuropean Union, Switzerland, 5 items
OrganizationGrant numberCountry
European Research Council (ERC)European Union
Swiss National Science Foundation Switzerland
European Molecular Biology Organization (EMBO)European Union
Other private
Other private
CitationJournal: To be published
Title: Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2
Authors: Vecchia L / Weiss J / Cavadini S / Kempf G / Kater L / Pathare G / Thoma NH
History
DepositionJun 19, 2025-
Header (metadata) releaseFeb 11, 2026-
Map releaseFeb 11, 2026-
UpdateFeb 11, 2026-
Current statusFeb 11, 2026Processing site: PDBe / Status: Released

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Structure visualization

Supplemental images

emd_54078.png

Downloads & links

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Map

FileDownload / File: emd_54078.map.gz / Format: CCP4 / Size: 52.7 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)
AnnotationFull map
Projections & slices

Image control

Size
Brightness
Contrast
Others
AxesZ (Sec.)Y (Row.)X (Col.)
1.69 Å/pix.
x 240 pix.
= 405.6 Å		1.69 Å/pix.
x 240 pix.
= 405.6 Å		1.69 Å/pix.
x 240 pix.
= 405.6 Å

Surface

Projections

Slices (1/3)

Slices (1/2)

Slices (2/3)

Images are generated by Spider.

Voxel sizeX=Y=Z: 1.69 Å
Density

Histogram

Histogram (log scale)
Contour LevelBy AUTHOR: 0.4
Minimum - Maximum-1.7982454 - 4.792322
Average (Standard dev.)-0.0012102686 (±0.13900559)
SymmetrySpace group: 1
Details

EMDB XML:

Map geometry
Axis orderXYZ
Origin000
Dimensions240240240
Spacing240240240
CellA=B=C: 405.6 Å
α=β=γ: 90.0 °

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Supplemental data

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Half map: Half-map B

Fileemd_54078_half_map_1.map
AnnotationHalf-map B
Projections & Slices
AxesZYX

Projections

Slices (1/2)
Density Histograms

Histogram

Histogram (log scale)

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Half map: Half-map A

Fileemd_54078_half_map_2.map
AnnotationHalf-map A
Projections & Slices
AxesZYX

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Slices (1/2)
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Histogram

Histogram (log scale)

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Sample components

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Entire : BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6

EntireName: BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6
Components
  • Complex: BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6
    • Complex: Nucleosome core particle
      • Protein or peptide: Histone H3.1
      • Protein or peptide: Histone H4
      • Protein or peptide: Histone H2A type 1-B/E
      • Protein or peptide: Histone H2B type 1-J
      • DNA: DNA (147-MER)
      • DNA: DNA (147-MER)
    • Complex: BAF complex
      • Protein or peptide: Transcription activator BRG1
      • Protein or peptide: Actin-like protein 6A
      • Protein or peptide: Actin, cytoplasmic 1, N-terminally processed
      • Protein or peptide: AT-rich interactive domain-containing protein 1A
      • Protein or peptide: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
      • Protein or peptide: SWI/SNF complex subunit SMARCC2
      • Protein or peptide: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
      • Protein or peptide: Zinc finger protein ubi-d4
    • Complex: OCT4/SOX2 heterodimer
      • Protein or peptide: Green fluorescent protein,POU domain, class 5, transcription factor 1
      • Protein or peptide: Transcription factor SOX-2

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Supramolecule #1: BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6

SupramoleculeName: BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6
type: complex / ID: 1 / Parent: 0 / Macromolecule list: all
Source (natural)Organism: Homo sapiens (human)

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Supramolecule #2: Nucleosome core particle

SupramoleculeName: Nucleosome core particle / type: complex / ID: 2 / Parent: 1 / Macromolecule list: #1-#4, #15-#16
Source (natural)Organism: Homo sapiens (human)

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Supramolecule #3: BAF complex

SupramoleculeName: BAF complex / type: complex / ID: 3 / Parent: 1 / Macromolecule list: #5-#12
Source (natural)Organism: Homo sapiens (human)

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Supramolecule #4: OCT4/SOX2 heterodimer

SupramoleculeName: OCT4/SOX2 heterodimer / type: complex / ID: 4 / Parent: 1 / Macromolecule list: #13-#14
Source (natural)Organism: Homo sapiens (human)

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Macromolecule #1: Histone H3.1

MacromoleculeName: Histone H3.1 / type: protein_or_peptide / ID: 1 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 15.719445 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString:
GSHMARTKQT ARKSTGGKAP RKQLATKAAR KSAPATGGVK KPHRYRPGTV ALREIRRYQK STELLIRKLP FQRLVREIAQ DFKTDLRFQ SSAVMALQEA CEAYLVGLFE DTNLCAIHAK RVTIMPKDIQ LARRIRGERA

UniProtKB: Histone H3.1

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Macromolecule #2: Histone H4

MacromoleculeName: Histone H4 / type: protein_or_peptide / ID: 2 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 11.676703 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString:
GSHMSGRGKG GKGLGKGGAK RHRKVLRDNI QGITKPAIRR LARRGGVKRI SGLIYEETRG VLKVFLENVI RDAVTYTEHA KRKTVTAMD VVYALKRQGR TLYGFGG

UniProtKB: Histone H4

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Macromolecule #3: Histone H2A type 1-B/E

MacromoleculeName: Histone H2A type 1-B/E / type: protein_or_peptide / ID: 3 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 14.447825 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString:
GSHMSGRGKQ GGKARAKAKT RSSRAGLQFP VGRVHRLLRK GNYSERVGAG APVYLAAVLE YLTAEILELA GNAARDNKKT RIIPRHLQL AIRNDEELNK LLGRVTIAQG GVLPNIQAVL LPKKTESHHK AKGK

UniProtKB: Histone H2A type 1-B/E

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Macromolecule #4: Histone H2B type 1-J

MacromoleculeName: Histone H2B type 1-J / type: protein_or_peptide / ID: 4 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 14.088336 KDa
Recombinant expressionOrganism: Escherichia coli (E. coli)
SequenceString:
GSHMPEPAKS APAPKKGSKK AVTKAQKKDG KKRKRSRKES YSIYVYKVLK QVHPDTGISS KAMGIMNSFV NDIFERIAGE ASRLAHYNK RSTITSREIQ TAVRLLLPGE LAKHAVSEGT KAVTKYTSA

UniProtKB: Histone H2B type 1-J

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Macromolecule #5: Transcription activator BRG1

MacromoleculeName: Transcription activator BRG1 / type: protein_or_peptide / ID: 5 / Number of copies: 1 / Enantiomer: LEVO
EC number: Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 184.923828 KDa
SequenceString: MSTPDPPLGG TPRPGPSPGP GPSPGAMLGP SPGPSPGSAH SMMGPSPGPP SAGHPIPTQG PGGYPQDNMH QMHKPMESMH EKGMSDDPR YNQMKGMGMR SGGHAGMGPP PSPMDQHSQG YPSPLGGSEH ASSPVPASGP SSGPQMSSGP GGAPLDGADP Q ALGQQNRG ...String:
MSTPDPPLGG TPRPGPSPGP GPSPGAMLGP SPGPSPGSAH SMMGPSPGPP SAGHPIPTQG PGGYPQDNMH QMHKPMESMH EKGMSDDPR YNQMKGMGMR SGGHAGMGPP PSPMDQHSQG YPSPLGGSEH ASSPVPASGP SSGPQMSSGP GGAPLDGADP Q ALGQQNRG PTPFNQNQLH QLRAQIMAYK MLARGQPLPD HLQMAVQGKR PMPGMQQQMP TLPPPSVSAT GPGPGPGPGP GP GPGPAPP NYSRPHGMGG PNMPPPGPSG VPPGMPGQPP GGPPKPWPEG PMANAAAPTS TPQKLIPPQP TGRPSPAPPA VPP AASPVM PPQTQSPGQP AQPAPMVPLH QKQSRITPIQ KPRGLDPVEI LQEREYRLQA RIAHRIQELE NLPGSLAGDL RTKA TIELK ALRLLNFQRQ LRQEVVVCMR RDTALETALN AKAYKRSKRQ SLREARITEK LEKQQKIEQE RKRRQKHQEY LNSIL QHAK DFKEYHRSVT GKIQKLTKAV ATYHANTERE QKKENERIEK ERMRRLMAED EEGYRKLIDQ KKDKRLAYLL QQTDEY VAN LTELVRQHKA AQVAKEKKKK KKKKKAENAE GQTPAIGPDG EPLDETSQMS DLPVKVIHVE SGKILTGTDA PKAGQLE AW LEMNPGYEVA PRSDSEESGS EEEEEEEEEE QPQAAQPPTL PVEEKKKIPD PDSDDVSEVD ARHIIENAKQ DVDDEYGV S QALARGLQSY YAVAHAVTER VDKQSALMVN GVLKQYQIKG LEWLVSLYNN NLNGILADEM GLGKTIQTIA LITYLMEHK RINGPFLIIV PLSTLSNWAY EFDKWAPSVV KVSYKGSPAA RRAFVPQLRS GKFNVLLTTY EYIIKDKHIL AKIRWKYMIV DEGHRMKNH HCKLTQVLNT HYVAPRRLLL TGTPLQNKLP ELWALLNFLL PTIFKSCSTF EQWFNAPFAM TGEKVDLNEE E TILIIRRL HKVLRPFLLR RLKKEVEAQL PEKVEYVIKC DMSALQRVLY RHMQAKGVLL TDGSEKDKKG KGGTKTLMNT IM QLRKICN HPYMFQHIEE SFSEHLGFTG GIVQGLDLYR ASGKFELLDR ILPKLRATNH KVLLFCQMTS LMTIMEDYFA YRG FKYLRL DGTTKAEDRG MLLKTFNEPG SEYFIFLLST RAGGLGLNLQ SADTVIIFDS DWNPHQDLQA QDRAHRIGQQ NEVR VLRLC TVNSVEEKIL AAAKYKLNVD QKVIQAGMFD QKSSSHERRA FLQAILEHEE QDESRHCSTG SGSASFAHTA PPPAG VNPD LEEPPLKEED EVPDDETVNQ MIARHEEEFD LFMRMDLDRR REEARNPKRK PRLMEEDELP SWIIKDDAEV ERLTCE EEE EKMFGRGSRH RKEVDYSDSL TEKQWLKAIE EGTLEEIEEE VRQKKSSRKR KRDSDAGSST PTTSTRSRDK DDESKKQ KK RGRPPAEKLS PNPPNLTKKM KKIVDAVIKY KDSSSGRQLS EVFIQLPSRK ELPEYYELIR KPVDFKKIKE RIRNHKYR S LNDLEKDVML LCQNAQTFNL EGSLIYEDSI VLQSVFTSVR QKIEKEDDSE GEESEEEEEG EEEGSESESR SVKVKIKLG RKEKAQDRLK GGRRRPSRGS RAKPVVSDDD SEEEQEEDRS GSGSEED

UniProtKB: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4

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Macromolecule #6: Actin-like protein 6A

MacromoleculeName: Actin-like protein 6A / type: protein_or_peptide / ID: 6 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 47.509812 KDa
SequenceString: MSGGVYGGDE VGALVFDIGS YTVRAGYAGE DCPKVDFPTA IGMVVERDDG STLMEIDGDK GKQGGPTYYI DTNALRVPRE NMEAISPLK NGMVEDWDSF QAILDHTYKM HVKSEASLHP VLMSEAPWNT RAKREKLTEL MFEHYNIPAF FLCKTAVLTA F ANGRSTGL ...String:
MSGGVYGGDE VGALVFDIGS YTVRAGYAGE DCPKVDFPTA IGMVVERDDG STLMEIDGDK GKQGGPTYYI DTNALRVPRE NMEAISPLK NGMVEDWDSF QAILDHTYKM HVKSEASLHP VLMSEAPWNT RAKREKLTEL MFEHYNIPAF FLCKTAVLTA F ANGRSTGL ILDSGATHTT AIPVHDGYVL QQGIVKSPLA GDFITMQCRE LFQEMNIELV PPYMIASKEA VREGSPANWK RK EKLPQVT RSWHNYMCNC VIQDFQASVL QVSDSTYDEQ VAAQMPTVHY EFPNGYNCDF GAERLKIPEG LFDPSNVKGL SGN TMLGVS HVVTTSVGMC DIDIRPGLYG SVIVAGGNTL IQSFTDRLNR ELSQKTPPSM RLKLIANNTT VERRFSSWIG GSIL ASLGT FQQMWISKQE YEEGGKQCVE RKCP

UniProtKB: Actin-like protein 6A

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Macromolecule #7: Actin, cytoplasmic 1, N-terminally processed

MacromoleculeName: Actin, cytoplasmic 1, N-terminally processed / type: protein_or_peptide / ID: 7 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 41.78266 KDa
SequenceString: MDDDIAALVV DNGSGMCKAG FAGDDAPRAV FPSIVGRPRH QGVMVGMGQK DSYVGDEAQS KRGILTLKYP IEHGIVTNWD DMEKIWHHT FYNELRVAPE EHPVLLTEAP LNPKANREKM TQIMFETFNT PAMYVAIQAV LSLYASGRTT GIVMDSGDGV T HTVPIYEG ...String:
MDDDIAALVV DNGSGMCKAG FAGDDAPRAV FPSIVGRPRH QGVMVGMGQK DSYVGDEAQS KRGILTLKYP IEHGIVTNWD DMEKIWHHT FYNELRVAPE EHPVLLTEAP LNPKANREKM TQIMFETFNT PAMYVAIQAV LSLYASGRTT GIVMDSGDGV T HTVPIYEG YALPHAILRL DLAGRDLTDY LMKILTERGY SFTTTAEREI VRDIKEKLCY VALDFEQEMA TAASSSSLEK SY ELPDGQV ITIGNERFRC PEALFQPSFL GMESCGIHET TFNSIMKCDV DIRKDLYANT VLSGGTTMYP GIADRMQKEI TAL APSTMK IKIIAPPERK YSVWIGGSIL ASLSTFQQMW ISKQEYDESG PSIVHRKCF

UniProtKB: Actin, cytoplasmic 1

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Macromolecule #8: AT-rich interactive domain-containing protein 1A

MacromoleculeName: AT-rich interactive domain-containing protein 1A / type: protein_or_peptide / ID: 8 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 242.250312 KDa
SequenceString: MAAQVAPAAA SSLGNPPPPP PSELKKAEQQ QREEAGGEAA AAAAAERGEM KAAAGQESEG PAVGPPQPLG KELQDGAESN GGGGGGGAG SGGGPGAEPD LKNSNGNAGP RPALNNNLTE PPGGGGGGSS DGVGAPPHSA AAALPPPAYG FGQPYGRSPS A VAAAAAAV ...String:
MAAQVAPAAA SSLGNPPPPP PSELKKAEQQ QREEAGGEAA AAAAAERGEM KAAAGQESEG PAVGPPQPLG KELQDGAESN GGGGGGGAG SGGGPGAEPD LKNSNGNAGP RPALNNNLTE PPGGGGGGSS DGVGAPPHSA AAALPPPAYG FGQPYGRSPS A VAAAAAAV FHQQHGGQQS PGLAALQSGG GGGLEPYAGP QQNSHDHGFP NHQYNSYYPN RSAYPPPAPA YALSSPRGGT PG SGAAAAA GSKPPPSSSA SASSSSSSFA QQRFGAMGGG GPSAAGGGTP QPTATPTLNQ LLTSPSSARG YQGYPGGDYS GGP QDGGAG KGPADMASQC WGAAAAAAAA AAASGGAQQR SHHAPMSPGS SGGGGQPLAR TPQPSSPMDQ MGKMRPQPYG GTNP YSQQQ GPPSGPQQGH GYPGQPYGSQ TPQRYPMTMQ GRAQSAMGGL SYTQQIPPYG QQGPSGYGQQ GQTPYYNQQS PHPQQ QQPP YSQQPPSQTP HAQPSYQQQP QSQPPQLQSS QPPYSQQPSQ PPHQQSPAPY PSQQSTTQQH PQSQPPYSQP QAQSPY QQQ QPQQPAPSTL SQQAAYPQPQ SQQSQQTAYS QQRFPPPQEL SQDSFGSQAS SAPSMTSSKG GQEDMNLSLQ SRPSSLP DL SGSIDDLPMG TEGALSPGVS TSGISSSQGE QSNPAQSPFS PHTSPHLPGI RGPSPSPVGS PASVAQSRSG PLSPAAVP G NQMPPRPPSG QSDSIMHPSM NQSSIAQDRG YMQRNPQMPQ YSSPQPGSAL SPRQPSGGQI HTGMGSYQQN SMGSYGPQG GQYGPQGGYP RQPNYNALPN ANYPSAGMAG GINPMGAGGQ MHGQPGIPPY GTLPPGRMSH ASMGNRPYGP NMANMPPQVG SGMCPPPGG MNRKTQETAV AMHVAANSIQ NRPPGYPNMN QGGMMGTGPP YGQGINSMAG MINPQGPPYS MGGTMANNSA G MAASPEMM GLGDVKLTPA TKMNNKADGT PKTESKSKKS SSSTTTNEKI TKLYELGGEP ERKMWVDRYL AFTEEKAMGM TN LPAVGRK PLDLYRLYVS VKEIGGLTQV NKNKKWRELA TNLNVGTSSS AASSLKKQYI QCLYAFECKI ERGEDPPPDI FAA ADSKKS QPKIQPPSPA GSGSMQGPQT PQSTSSSMAE GGDLKPPTPA STPHSQIPPL PGMSRSNSVG IQDAFNDGSD STFQ KRNSM TPNPGYQPSM NTSDMMGRMS YEPNKDPYGS MRKAPGSDPF MSSGQGPNGG MGDPYSRAAG PGLGNVAMGP RQHYP YGGP YDRVRTEPGI GPEGNMSTGA PQPNLMPSNP DSGMYSPSRY PPQQQQQQQQ RHDSYGNQFS TQGTPSGSPF PSQQTT MYQ QQQQNYKRPM DGTYGPPAKR HEGEMYSVPY STGQGQPQQQ QLPPAQPQPA SQQQAAQPSP QQDVYNQYGN AYPATAT AA TERRPAGGPQ NQFPFQFGRD RVSAPPGTNA QQNMPPQMMG GPIQASAEVA QQGTMWQGRN DMTYNYANRQ STGSAPQG P AYHGVNRTDE MLHTDQRANH EGSWPSHGTR QPPYGPSAPV PPMTRPPPSN YQPPPSMQNH IPQVSSPAPL PRPMENRTS PSKSPFLHSG MKMQKAGPPV PASHIAPAPV QPPMIRRDIT FPPGSVEATQ PVLKQRRRLT MKDIGTPEAW RVMMSLKSGL LAESTWALD TINILLYDDN SIMTFNLSQL PGLLELLVEY FRRCLIEIFG ILKEYEVGDP GQRTLLDPGR FSKVSSPAPM E GGEEEEEL LGPKLEEEEE EEVVENDEEI AFSGKDKPAS ENSEEKLISK FDKLPVKIVQ KNDPFVVDCS DKLGRVQEFD SG LLHWRIG GGDTTEHIQT HFESKTELLP SRPHAPCPPA PRKHVTTAEG TPGTTDQEGP PPDGPPEKRI TATMDDMLST RSS TLTEDG AKSSEAIKES SKFPFGISPA QSHRNIKILE DEPHSKDETP LCTLLDWQDS LAKRCVCVSN TIRSLSFVPG NDFE MSKHP GLLLILGKLI LLHHKHPERK QAPLTYEKEE EQDQGVSCNK VEWWWDCLEM LRENTLVTLA NISGQLDLSP YPESI CLPV LDGLLHWAVC PSAEAQDPFS TLGPNAVLSP QRLVLETLSK LSIQDNNVDL ILATPPFSRL EKLYSTMVRF LSDRKN PVC REMAVVLLAN LAQGDSLAAR AIAVQKGSIG NLLGFLEDSL AATQFQQSQA SLLHMQNPPF EPTSVDMMRR AARALLA LA KVDENHSEFT LYESRLLDIS VSPLMNSLVS QVICDVLFLI GQS

UniProtKB: AT-rich interactive domain-containing protein 1A

+
Macromolecule #9: SWI/SNF-related matrix-associated actin-dependent regulator of ch...

MacromoleculeName: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
type: protein_or_peptide / ID: 9 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 44.199188 KDa
SequenceString: MMMMALSKTF GQKPVKFQLE DDGEFYMIGS EVGNYLRMFR GSLYKRYPSL WRRLATVEER KKIVASSHGK KTKPNTKDHG YTTLATSVT LLKASEVEEI LDGNDEKYKA VSISTEPPTY LREQKAKRNS QWVPTLPNSS HHLDAVPCST TINRNRMGRD K KRTFPLCF ...String:
MMMMALSKTF GQKPVKFQLE DDGEFYMIGS EVGNYLRMFR GSLYKRYPSL WRRLATVEER KKIVASSHGK KTKPNTKDHG YTTLATSVT LLKASEVEEI LDGNDEKYKA VSISTEPPTY LREQKAKRNS QWVPTLPNSS HHLDAVPCST TINRNRMGRD K KRTFPLCF DDHDPAVIHE NASQPEVLVP IRLDMEIDGQ KLRDAFTWNM NEKLMTPEMF SEILCDDLDL NPLTFVPAIA SA IRQQIES YPTDSILEDQ SDQRVIIKLN IHVGNISLVD QFEWDMSEKE NSPEKFALKL CSELGLGGEF VTTIAYSIRG QLS WHQKTY AFSENPLPTV EIAIRNTGDA DQWCPLLETL TDAEMEKKIR DQDRNTRRMR RLANTAPAW

UniProtKB: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

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Macromolecule #10: SWI/SNF complex subunit SMARCC2

MacromoleculeName: SWI/SNF complex subunit SMARCC2 / type: protein_or_peptide / ID: 10 / Number of copies: 2 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 133.048109 KDa
SequenceString: MAVRKKDGGP NVKYYEAADT VTQFDNVRLW LGKNYKKYIQ AEPPTNKSLS SLVVQLLQFQ EEVFGKHVSN APLTKLPIKC FLDFKAGGS LCHILAAAYK FKSDQGWRRY DFQNPSRMDR NVEMFMTIEK SLVQNNCLSR PNIFLCPEIE PKLLGKLKDI I KRHQGTVT ...String:
MAVRKKDGGP NVKYYEAADT VTQFDNVRLW LGKNYKKYIQ AEPPTNKSLS SLVVQLLQFQ EEVFGKHVSN APLTKLPIKC FLDFKAGGS LCHILAAAYK FKSDQGWRRY DFQNPSRMDR NVEMFMTIEK SLVQNNCLSR PNIFLCPEIE PKLLGKLKDI I KRHQGTVT EDKNNASHVV YPVPGNLEEE EWVRPVMKRD KQVLLHWGYY PDSYDTWIPA SEIEASVEDA PTPEKPRKVH AK WILDTDT FNEWMNEEDY EVNDDKNPVS RRKKISAKTL TDEVNSPDSD RRDKKGGNYK KRKRSPSPSP TPEAKKKNAK KGP STPYTK SKRGHREEEQ EDLTKDMDEP SPVPNVEEVT LPKTVNTKKD SESAPVKGGT MTDLDEQEDE SMETTGKDED ENST GNKGE QTKNPDLHED NVTEQTHHII IPSYAAWFDY NSVHAIERRA LPEFFNGKNK SKTPEIYLAY RNFMIDTYRL NPQEY LTST ACRRNLAGDV CAIMRVHAFL EQWGLINYQV DAESRPTPMG PPPTSHFHVL ADTPSGLVPL QPKTPQQTSA SQQMLN FPD KGKEKPTDMQ NFGLRTDMYT KKNVPSKSKA AASATREWTE QETLLLLEAL EMYKDDWNKV SEHVGSRTQD ECILHFL RL PIEDPYLEDS EASLGPLAYQ PIPFSQSGNP VMSTVAFLAS VVDPRVASAA AKSALEEFSK MKEEVPTALV EAHVRKVE E AAKVTGKADP AFGLESSGIA GTTSDEPERI EESGNDEARV EGQATDEKKE PKEPREGGGA IEEEAKEKTS EAPKKDEEK GKEGDSEKES EKSDGDPIVD PEKEKEPKEG QEEVLKEVVE SEGERKTKVE RDIGEGNLST AAAAALAAAA VKAKHLAAVE ERKIKSLVA LLVETQMKKL EIKLRHFEEL ETIMDREREA LEYQRQQLLA DRQAFHMEQL KYAEMRARQQ HFQQMHQQQQ Q PPPALPPG SQPIPPTGAA GPPAVHGLAV APASVVPAPA GSGAPPGSLG PSEQIGQAGS TAGPQQQQPA GAPQPGAVPP GV PPPGPHG PSPFPNQQTP PSMMPGAVPG SGHPGVAGNA PLGLPFGMPP PPPPPAPSII PFGSLADSIS INLPAPPNLH GHH HHLPFA PGTLPPPNLP VSMANPLHPN LPATTTMPSS LPLGPGLGSA AAQSPAIVAA VQGNLLPSAS PLPDPGTPLP PDPT APSPG TVTPVPPPQ

UniProtKB: SWI/SNF complex subunit SMARCC2

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Macromolecule #11: SWI/SNF-related matrix-associated actin-dependent regulator of ch...

MacromoleculeName: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
type: protein_or_peptide / ID: 11 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 58.311391 KDa
SequenceString: MAARAGFQSV APSGGAGASG GAGAAAALGP GGTPGPPVRM GPAPGQGLYR SPMPGAAYPR PGMLPGSRMT PQGPSMGPPG YGGNPSVRP GLAQSGMDQS RKRPAPQQIQ QVQQQAVQNR NHNAKKKKMA DKILPQRIRE LVPESQAYMD LLAFERKLDQ T IMRKRLDI ...String:
MAARAGFQSV APSGGAGASG GAGAAAALGP GGTPGPPVRM GPAPGQGLYR SPMPGAAYPR PGMLPGSRMT PQGPSMGPPG YGGNPSVRP GLAQSGMDQS RKRPAPQQIQ QVQQQAVQNR NHNAKKKKMA DKILPQRIRE LVPESQAYMD LLAFERKLDQ T IMRKRLDI QEALKRPIKQ KRKLRIFISN TFNPAKSDAE DGEGTVASWE LRVEGRLLED SALSKYDATK QKRKFSSFFK SL VIELDKD LYGPDNHLVE WHRTATTQET DGFQVKRPGD VNVRCTVLLM LDYQPPQFKL DPRLARLLGI HTQTRPVIIQ ALW QYIKTH KLQDPHEREF VICDKYLQQI FESQRMKFSE IPQRLHALLM PPEPIIINHV ISVDPNDQKK TACYDIDVEV DDTL KTQMN SFLLSTASQQ EIATLDNKIH ETIETINQLK TQREFMLSFA RDPQGFINDW LQSQCRDLKT MTDVVGNPEE ERRAE FYFQ PWAQEAVCRY FYSKVQQRRQ ELEQALGIRN T

UniProtKB: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1

+
Macromolecule #12: Zinc finger protein ubi-d4

MacromoleculeName: Zinc finger protein ubi-d4 / type: protein_or_peptide / ID: 12 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 48.554125 KDa
Recombinant expressionOrganism: Homo sapiens (human)
SequenceString: MAAVVENVVK LLGEQYYKDA MEQCHNYNAR LCAERSVRLP FLDSQTGVAQ SNCYIWMEKR HRGPGLASGQ LYSYPARRWR KKRRAHPPE DPRLSFPSIK PDTDQTLKKE GLISQDGSSL EALLRTDPLE KRGAPDPRVD DDSLGEFPVT NSRARKRILE P DDFLDDLD ...String:
MAAVVENVVK LLGEQYYKDA MEQCHNYNAR LCAERSVRLP FLDSQTGVAQ SNCYIWMEKR HRGPGLASGQ LYSYPARRWR KKRRAHPPE DPRLSFPSIK PDTDQTLKKE GLISQDGSSL EALLRTDPLE KRGAPDPRVD DDSLGEFPVT NSRARKRILE P DDFLDDLD DEDYEEDTPK RRGKGKSKGK GVGSARKKLD ASILEDRDKP YACDICGKRY KNRPGLSYHY AHSHLAEEEG ED KEDSQPP TPVSQRSEEQ KSKKGPDGLA LPNNYCDFCL GDSKINKKTG QPEELVSCSD CGRSGHPSCL QFTPVMMAAV KTY RWQCIE CKCCNICGTS ENDDQLLFCD DCDRGYHMYC LTPSMSEPPE GSWSCHLCLD LLKEKASIYQ NQNSSGTLEV LFQG PGGSG SAWSHPQFEK GGGSGGGSGG SAWSHPQFEK

UniProtKB: Zinc finger protein ubi-d4

+
Macromolecule #13: Green fluorescent protein,POU domain, class 5, transcription factor 1

MacromoleculeName: Green fluorescent protein,POU domain, class 5, transcription factor 1
type: protein_or_peptide / ID: 13 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 70.735531 KDa
Recombinant expressionOrganism: Trichoplusia ni (cabbage looper)
SequenceString: MDWSHPQFEK SAVDENLYFQ GGGRMVSKGE ELFTGVVPIL VELDGDVNGH KFSVSGEGEG DATYGKLTLK FICTTGKLPV PWPTLVTTL TYGVQCFSRY PDHMKQHDFF KSAMPEGYVQ ERTIFFKDDG NYKTRAEVKF EGDTLVNRIE LKGIDFKEDG N ILGHKLEY ...String:
MDWSHPQFEK SAVDENLYFQ GGGRMVSKGE ELFTGVVPIL VELDGDVNGH KFSVSGEGEG DATYGKLTLK FICTTGKLPV PWPTLVTTL TYGVQCFSRY PDHMKQHDFF KSAMPEGYVQ ERTIFFKDDG NYKTRAEVKF EGDTLVNRIE LKGIDFKEDG N ILGHKLEY NYNSHNVYIM ADKQKNGIKV NFKIRHNIED GSVQLADHYQ QNTPIGDGPV LLPDNHYLST QSKLSKDPNE KR DHMVLLE FVTAAGITLG MDELYKEAAA KEAAAKMAGH LASDFAFSPP PGGGGDGPGG PEPGWVDPRT WLSFQGPPGG PGI GPGVGP GSEVWGIPPC PPPYEFCGGM AYCGPQVGVG LVPQGGLETS QPEGEAGVGV ESNSDGASPE PCTVTPGAVK LEKE KLEQN PEESQDIKAL QKELEQFAKL LKQKRITLGY TQADVGLTLG VLFGKVFSQT TICRFEALQL SFKNMCKLRP LLQKW VEEA DNNENLQEIC KAETLVQARK RKRTSIENRV RGNLENLFLQ CPKPTLQQIS HIAQQLGLEK DVVRVWFCNR RQKGKR SSS DYAQREDFEA AGSPFSGGPV SFPLAPGPHF GTPGYGSPHF TALYSSVPFP EGEAFPPVSV TTLGSPMHSN LPETGGH HH HHH

UniProtKB: Green fluorescent protein, POU domain, class 5, transcription factor 1

+
Macromolecule #14: Transcription factor SOX-2

MacromoleculeName: Transcription factor SOX-2 / type: protein_or_peptide / ID: 14 / Number of copies: 1 / Enantiomer: LEVO
Source (natural)Organism: Homo sapiens (human)
Molecular weightTheoretical: 12.718679 KDa
Recombinant expressionOrganism: Trichoplusia ni (cabbage looper)
SequenceString:
MDWSHPQFEK SAVDENLYFQ GGMSPDRVKR PMNAFMVWSR GQRRKMAQEN PKMHNSEISK RLGAEWKLLS ETEKRPFIDE AKRLRALHM KEHPDYKYRP RRKTKT

UniProtKB: Transcription factor SOX-2

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Macromolecule #15: DNA (147-MER)

MacromoleculeName: DNA (147-MER) / type: dna / ID: 15 / Number of copies: 1 / Classification: DNA
Source (natural)Organism: synthetic construct (others)
Molecular weightTheoretical: 69.794414 KDa
SequenceString: (DC)(DC)(DG)(DC)(DA)(DG)(DC)(DC)(DG)(DA) (DA)(DC)(DG)(DA)(DC)(DC)(DG)(DA)(DG)(DC) (DG)(DC)(DA)(DG)(DC)(DG)(DA)(DG)(DT) (DC)(DA)(DG)(DT)(DG)(DG)(DA)(DT)(DA)(DT) (DC) (DC)(DT)(DG)(DG)(DA)(DG) ...String:
(DC)(DC)(DG)(DC)(DA)(DG)(DC)(DC)(DG)(DA) (DA)(DC)(DG)(DA)(DC)(DC)(DG)(DA)(DG)(DC) (DG)(DC)(DA)(DG)(DC)(DG)(DA)(DG)(DT) (DC)(DA)(DG)(DT)(DG)(DG)(DA)(DT)(DA)(DT) (DC) (DC)(DT)(DG)(DG)(DA)(DG)(DA)(DA) (DT)(DC)(DC)(DC)(DG)(DG)(DT)(DC)(DT)(DG) (DC)(DA) (DG)(DG)(DC)(DC)(DG)(DC)(DT) (DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG) (DT)(DA)(DG) (DA)(DC)(DA)(DG)(DC)(DT) (DC)(DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC) (DT)(DT)(DA)(DA) (DA)(DC)(DG)(DC)(DA) (DC)(DG)(DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT) (DG)(DT)(DC)(DC)(DC) (DC)(DC)(DG)(DC) (DG)(DT)(DT)(DT)(DT)(DA)(DA)(DC)(DC)(DG) (DC)(DC)(DA)(DA)(DG)(DG) (DG)(DG)(DA) (DT)(DT)(DA)(DC)(DT)(DC)(DC)(DC)(DT)(DA) (DG)(DT)(DC)(DT)(DC)(DC)(DA) (DG)(DG) (DC)(DC)(DT)(DT)(DT)(DG)(DT)(DT)(DA)(DT) (DG)(DC)(DA)(DA)(DA)(DT)(DA)(DC) (DA) (DT)(DC)(DC)(DT)(DG)(DT)(DC)(DG)(DG)(DG) (DA)(DT)(DC)(DC)(DT)(DA)(DA)(DT)(DG) (DA)(DC)(DC)(DA)(DA)(DG)(DG)(DA)(DA)(DA) (DG)(DC)(DA)(DT)(DG)(DA)(DT)(DT)(DC)(DT) (DT)(DC)(DA)(DC)(DA)(DC)(DC)

+
Macromolecule #16: DNA (147-MER)

MacromoleculeName: DNA (147-MER) / type: dna / ID: 16 / Number of copies: 1 / Classification: DNA
Source (natural)Organism: synthetic construct (others)
Molecular weightTheoretical: 70.389781 KDa
SequenceString: (DG)(DG)(DT)(DG)(DT)(DG)(DA)(DA)(DG)(DA) (DA)(DT)(DC)(DA)(DT)(DG)(DC)(DT)(DT)(DT) (DC)(DC)(DT)(DT)(DG)(DG)(DT)(DC)(DA) (DT)(DT)(DA)(DG)(DG)(DA)(DT)(DC)(DC)(DC) (DG) (DA)(DC)(DA)(DG)(DG)(DA) ...String:
(DG)(DG)(DT)(DG)(DT)(DG)(DA)(DA)(DG)(DA) (DA)(DT)(DC)(DA)(DT)(DG)(DC)(DT)(DT)(DT) (DC)(DC)(DT)(DT)(DG)(DG)(DT)(DC)(DA) (DT)(DT)(DA)(DG)(DG)(DA)(DT)(DC)(DC)(DC) (DG) (DA)(DC)(DA)(DG)(DG)(DA)(DT)(DG) (DT)(DA)(DT)(DT)(DT)(DG)(DC)(DA)(DT)(DA) (DA)(DC) (DA)(DA)(DA)(DG)(DG)(DC)(DC) (DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG) (DG)(DG)(DA) (DG)(DT)(DA)(DA)(DT)(DC) (DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG) (DT)(DT)(DA)(DA) (DA)(DA)(DC)(DG)(DC) (DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC) (DG)(DC)(DG)(DT)(DA) (DC)(DG)(DT)(DG) (DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG) (DG)(DT)(DG)(DC)(DT)(DA) (DG)(DA)(DG) (DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA) (DC)(DC)(DA)(DA)(DT)(DT)(DG) (DA)(DG) (DC)(DG)(DG)(DC)(DC)(DT)(DG)(DC)(DA)(DG) (DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT) (DT) (DC)(DT)(DC)(DC)(DA)(DG)(DG)(DA)(DT)(DA) (DT)(DC)(DC)(DA)(DC)(DT)(DG)(DA)(DC) (DT)(DC)(DG)(DC)(DT)(DG)(DC)(DG)(DC)(DT) (DC)(DG)(DG)(DT)(DC)(DG)(DT)(DT)(DC)(DG) (DG)(DC)(DT)(DG)(DC)(DG)(DG)

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Experimental details

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Structure determination

Methodcryo EM
Processingsingle particle reconstruction
Aggregation stateparticle

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Sample preparation

BufferpH: 8
VitrificationCryogen name: ETHANE

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Electron microscopy

MicroscopeTFS KRIOS
Image recordingFilm or detector model: FEI FALCON IV (4k x 4k) / Average electron dose: 50.0 e/Å2
Electron beamAcceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN
Electron opticsIllumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.5 µm / Nominal defocus min: 0.5 µm
Experimental equipment
Model: Titan Krios / Image courtesy: FEI Company

+
Image processing

CTF correctionSoftware - Name: Gctf / Type: PHASE FLIPPING AND AMPLITUDE CORRECTION
Startup modelType of model: INSILICO MODEL
Final reconstructionResolution.type: BY AUTHOR / Resolution: 4.1 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC / Number images used: 27074
Initial angle assignmentType: MAXIMUM LIKELIHOOD
Final angle assignmentType: MAXIMUM LIKELIHOOD
FSC plot (resolution estimation)

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Atomic model buiding 1

RefinementSpace: REAL / Protocol: FLEXIBLE FIT
Output model

PDB-9rn2:
Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2

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