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Open data
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Basic information
| Entry | ![]() | ||||||||||||||||||
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| Title | Human Amylin1 Receptor in complex with Gs and cagrilintide | ||||||||||||||||||
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Keywords | Obesity / calcitonin receptor / amylin receptor / receptor activity-modifying protein / GPCR / MEMBRANE PROTEIN | ||||||||||||||||||
| Function / homology | Function and homology informationcalcitonin gene-related peptide binding / CGRP receptor complex / : / calcitonin binding / calcitonin family receptor activity / amylin receptor complex 1 / amylin receptor complex 2 / calcitonin family receptor signaling pathway / amylin receptor complex 3 / amylin receptor activity ...calcitonin gene-related peptide binding / CGRP receptor complex / : / calcitonin binding / calcitonin family receptor activity / amylin receptor complex 1 / amylin receptor complex 2 / calcitonin family receptor signaling pathway / amylin receptor complex 3 / amylin receptor activity / calcitonin receptor activity / calcitonin gene-related peptide receptor signaling pathway / calcitonin gene-related peptide receptor activity / amylin receptor 3 signaling pathway / amylin receptor 2 signaling pathway / amylin receptor 1 signaling pathway / amylin receptor signaling pathway / Calcitonin-like ligand receptors / regulation of G protein-coupled receptor signaling pathway / negative regulation of ossification / response to amyloid-beta / positive regulation of cAMP/PKA signal transduction / PKA activation in glucagon signalling / developmental growth / hair follicle placode formation / D1 dopamine receptor binding / intracellular transport / vascular endothelial cell response to laminar fluid shear stress / renal water homeostasis / activation of adenylate cyclase activity / Hedgehog 'off' state / cellular response to hormone stimulus / coreceptor activity / adenylate cyclase-activating adrenergic receptor signaling pathway / regulation of mRNA stability / cellular response to glucagon stimulus / acrosomal vesicle / regulation of insulin secretion / positive regulation of calcium-mediated signaling / ossification / response to glucocorticoid / osteoclast differentiation / adenylate cyclase activator activity / trans-Golgi network membrane / protein localization to plasma membrane / intracellular protein transport / negative regulation of inflammatory response to antigenic stimulus / bone development / receptor internalization / platelet aggregation / G-protein beta/gamma-subunit complex binding / cognition / Olfactory Signaling Pathway / Activation of the phototransduction cascade / adenylate cyclase-activating G protein-coupled receptor signaling pathway / G beta:gamma signalling through PLC beta / Presynaptic function of Kainate receptors / Thromboxane signalling through TP receptor / G protein-coupled acetylcholine receptor signaling pathway / Activation of G protein gated Potassium channels / Inhibition of voltage gated Ca2+ channels via Gbeta/gamma subunits / G-protein activation / Prostacyclin signalling through prostacyclin receptor / G beta:gamma signalling through CDC42 / Glucagon signaling in metabolic regulation / G beta:gamma signalling through BTK / Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1) / ADP signalling through P2Y purinoceptor 12 / photoreceptor disc membrane / Sensory perception of sweet, bitter, and umami (glutamate) taste / Glucagon-type ligand receptors / Adrenaline,noradrenaline inhibits insulin secretion / Vasopressin regulates renal water homeostasis via Aquaporins / calcium ion transport / Glucagon-like Peptide-1 (GLP1) regulates insulin secretion / G alpha (z) signalling events / sensory perception of smell / cellular response to catecholamine stimulus / ADORA2B mediated anti-inflammatory cytokines production / ADP signalling through P2Y purinoceptor 1 / G beta:gamma signalling through PI3Kgamma / adenylate cyclase-activating dopamine receptor signaling pathway / Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding / GPER1 signaling / Inactivation, recovery and regulation of the phototransduction cascade / cellular response to prostaglandin E stimulus / G-protein beta-subunit binding / heterotrimeric G-protein complex / G alpha (12/13) signalling events / sensory perception of taste / extracellular vesicle / protein transport / signaling receptor complex adaptor activity / Thrombin signalling through proteinase activated receptors (PARs) / positive regulation of cold-induced thermogenesis / amyloid-beta binding / retina development in camera-type eye / G protein activity / positive regulation of cytosolic calcium ion concentration / GTPase binding Similarity search - Function | ||||||||||||||||||
| Biological species | Homo sapiens (human) / ![]() | ||||||||||||||||||
| Method | single particle reconstruction / cryo EM / Resolution: 2.2 Å | ||||||||||||||||||
Authors | Cao J / Belousoff MJ / Johnson RM / Sexton PM / Wootten DL | ||||||||||||||||||
| Funding support | Australia, 5 items
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Citation | Journal: Nat Commun / Year: 2025Title: Structural and dynamic features of cagrilintide binding to calcitonin and amylin receptors. Authors: Jianjun Cao / Matthew J Belousoff / Rachel M Johnson / Peter Keov / Zamara Mariam / Giuseppe Deganutti / George Christopoulos / Caroline A Hick / Steffen Reedtz-Runge / Tine Glendorf / Borja ...Authors: Jianjun Cao / Matthew J Belousoff / Rachel M Johnson / Peter Keov / Zamara Mariam / Giuseppe Deganutti / George Christopoulos / Caroline A Hick / Steffen Reedtz-Runge / Tine Glendorf / Borja Ballarín-González / Kirsten Raun / Charles Bayly-Jones / Denise Wootten / Patrick M Sexton / ![]() Abstract: Obesity is a major and increasingly prevalent chronic metabolic disease with numerous comorbidities. While recent incretin-based therapies have provided pharmaceutical inroads into treatment of ...Obesity is a major and increasingly prevalent chronic metabolic disease with numerous comorbidities. While recent incretin-based therapies have provided pharmaceutical inroads into treatment of obesity, there remains an ongoing need for additional medicines with distinct modes of action as independent or complementary therapeutics. Among the most promising candidates, supported by phase 1 and 2 clinical trials, is cagrilintide, a long-acting amylin and calcitonin receptor agonist. As such, understanding how cagrilintide functionally engages target receptors is critical for future development of this target class. Here, we determine structures of cagrilintide bound to Gs-coupled, active, amylin receptors (AMYR, AMYR, AMYR) and calcitonin receptor (CTR) and compare cagrilintide interactions and the dynamics of receptor complexes with previously reported structures of receptors bound to rat amylin, salmon calcitonin or recently developed amylin-based peptides. These data reveal that cagrilintide has an amylin-like binding mode but, compared to other peptides, induces distinct conformational dynamics at calcitonin-family receptors that could contribute to its clinical efficacy. | ||||||||||||||||||
| History |
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Structure visualization
| Supplemental images |
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Downloads & links
-EMDB archive
| Map data | emd_44760.map.gz | 85.1 MB | EMDB map data format | |
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| Header (meta data) | emd-44760-v30.xml emd-44760.xml | 39.6 KB 39.6 KB | Display Display | EMDB header |
| FSC (resolution estimation) | emd_44760_fsc.xml | 10.2 KB | Display | FSC data file |
| Images | emd_44760.png | 27.8 KB | ||
| Filedesc metadata | emd-44760.cif.gz | 8.9 KB | ||
| Others | emd_44760_additional_1.map.gz emd_44760_additional_2.map.gz emd_44760_additional_3.map.gz emd_44760_additional_4.map.gz emd_44760_half_map_1.map.gz emd_44760_half_map_2.map.gz | 71.5 MB 83.2 MB 2.1 MB 1.5 MB 71.7 MB 71.7 MB | ||
| Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-44760 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-44760 | HTTPS FTP |
-Validation report
| Summary document | emd_44760_validation.pdf.gz | 914.5 KB | Display | EMDB validaton report |
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| Full document | emd_44760_full_validation.pdf.gz | 914.1 KB | Display | |
| Data in XML | emd_44760_validation.xml.gz | 17.4 KB | Display | |
| Data in CIF | emd_44760_validation.cif.gz | 22.9 KB | Display | |
| Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-44760 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-44760 | HTTPS FTP |
-Related structure data
| Related structure data | ![]() 9bp3MC ![]() 9blbC ![]() 9blcC ![]() 9blwC ![]() 9bq3C ![]() 9btwC ![]() 9bubC ![]() 9bucC ![]() 9budC ![]() 9bueC M: atomic model generated by this map C: citing same article ( |
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| Similar structure data | Similarity search - Function & homology F&H Search |
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Links
| EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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| Related items in Molecule of the Month |
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Map
| File | Download / File: emd_44760.map.gz / Format: CCP4 / Size: 91.1 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||
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| Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||
| Voxel size | X=Y=Z: 0.85 Å | ||||||||||||||||||||||||||||||||||||
| Density |
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| Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||
| Details | EMDB XML:
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-Supplemental data
-Additional map: unfiltered consensus map
| File | emd_44760_additional_1.map | ||||||||||||
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| Annotation | unfiltered consensus map | ||||||||||||
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| Density Histograms |
-Additional map: filtered map of receptor-focused refinement using auto B factor
| File | emd_44760_additional_2.map | ||||||||||||
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| Annotation | filtered map of receptor-focused refinement using auto B factor | ||||||||||||
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| Density Histograms |
-Additional map: filtered map of receptor-focused refinement using manual B factor 20
| File | emd_44760_additional_3.map | ||||||||||||
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| Annotation | filtered map of receptor-focused refinement using manual B factor 20 | ||||||||||||
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| Density Histograms |
-Additional map: filtered map of ECD-focused refinement using manual B factor 20
| File | emd_44760_additional_4.map | ||||||||||||
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| Annotation | filtered map of ECD-focused refinement using manual B factor 20 | ||||||||||||
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| Density Histograms |
-Half map: #2
| File | emd_44760_half_map_1.map | ||||||||||||
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| Density Histograms |
-Half map: #1
| File | emd_44760_half_map_2.map | ||||||||||||
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Sample components
+Entire : Human Amylin1 Receptor in complex with Gs and cagrilintide
+Supramolecule #1: Human Amylin1 Receptor in complex with Gs and cagrilintide
+Macromolecule #1: Receptor activity-modifying protein 1
+Macromolecule #2: Cagrilintide
+Macromolecule #3: Calcitonin receptor
+Macromolecule #4: Guanine nucleotide-binding protein G(s) subunit alpha isoforms short
+Macromolecule #5: Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
+Macromolecule #6: Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
+Macromolecule #7: Nanobody 35
+Macromolecule #8: icosanedioic acid
+Macromolecule #9: 2-acetamido-2-deoxy-beta-D-glucopyranose
+Macromolecule #10: (2S)-2-{[(1R)-1-hydroxyhexadecyl]oxy}-3-{[(1R)-1-hydroxyoctadecyl...
+Macromolecule #11: CHOLESTEROL HEMISUCCINATE
+Macromolecule #12: water
-Experimental details
-Structure determination
| Method | cryo EM |
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Processing | single particle reconstruction |
| Aggregation state | particle |
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Sample preparation
| Concentration | 4 mg/mL | ||||||||||||
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| Buffer | pH: 7.4 Component:
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| Grid | Model: UltrAuFoil R1.2/1.3 / Material: GOLD / Mesh: 300 / Pretreatment - Type: GLOW DISCHARGE / Pretreatment - Time: 120 sec. | ||||||||||||
| Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Chamber temperature: 277 K / Instrument: FEI VITROBOT MARK IV |
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Electron microscopy
| Microscope | FEI TITAN KRIOS |
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| Image recording | Film or detector model: GATAN K3 (6k x 4k) / Number real images: 5018 / Average exposure time: 4.1 sec. / Average electron dose: 60.0 e/Å2 |
| Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
| Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 1.5 µm / Nominal defocus min: 0.5 µm |
| Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
Movie
Controller
About Yorodumi




Keywords
Homo sapiens (human)
Authors
Australia, 5 items
Citation







































Z (Sec.)
Y (Row.)
X (Col.)




































































Trichoplusia ni (cabbage looper)




Processing
FIELD EMISSION GUN


