Entry Database : EMDB / ID : EMD-38197 Downloads & linksTitle Cryo-EM structure of Bacillus RNAP and HelD complex Map data Details SampleComplex : Cryo-EM structure of Bacillus RNAP and HelD complexProtein or peptide : DNA-directed RNA polymerase subunit alphaProtein or peptide : DNA-directed RNA polymerase subunit beta'Protein or peptide : DNA-directed RNA polymerase subunit epsilonProtein or peptide : DNA-directed RNA polymerase subunit omegaProtein or peptide : DNA helicase IVProtein or peptide : DNA-directed RNA polymerase subunit betaProtein or peptide : DNA-directed RNA polymerase subunit delta Show more 3 items Show lessLigand : ZINC IONLigand : MAGNESIUM ION Details Keywords complex / TRANSCRIPTIONFunction / homology Function and homology informationFunction Domain/homology Component
transcription elongation factor activity / recombinational repair / 3'-5' DNA helicase activity / bacterial-type RNA polymerase core enzyme binding / cytosolic DNA-directed RNA polymerase complex / DNA-directed RNA polymerase complex / DNA-templated transcription initiation / ribonucleoside binding / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / DNA-directed RNA polymerase ... transcription elongation factor activity / recombinational repair / 3'-5' DNA helicase activity / bacterial-type RNA polymerase core enzyme binding / cytosolic DNA-directed RNA polymerase complex / DNA-directed RNA polymerase complex / DNA-templated transcription initiation / ribonucleoside binding / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / DNA-directed RNA polymerase / DNA-directed RNA polymerase activity / protein dimerization activity / response to antibiotic / regulation of DNA-templated transcription / DNA-templated transcription / magnesium ion binding / ATP hydrolysis activity / DNA binding / zinc ion binding / ATP binding / cytoplasm / cytosol Similarity search - Function : / RNA polymerase epsilon subunit / RNA polymerase epsilon subunit / DNA-directed RNA polymerase subunit delta / DNA-directed RNA polymerase subunit delta, N-terminal domain superfamily / ASXL, HARE-HTH domain / HB1, ASXL, restriction endonuclease HTH domain / HARE-type HTH domain profile. / UvrD-like helicase C-terminal domain / UvrD-like helicase C-terminal domain ... : / RNA polymerase epsilon subunit / RNA polymerase epsilon subunit / DNA-directed RNA polymerase subunit delta / DNA-directed RNA polymerase subunit delta, N-terminal domain superfamily / ASXL, HARE-HTH domain / HB1, ASXL, restriction endonuclease HTH domain / HARE-type HTH domain profile. / UvrD-like helicase C-terminal domain / UvrD-like helicase C-terminal domain / UvrD/REP helicase N-terminal domain / UvrD-like DNA helicase ATP-binding domain profile. / DNA helicase, UvrD/REP type / UvrD-like helicase, ATP-binding domain / DNA-directed RNA polymerase, omega subunit / DNA-directed RNA polymerase, subunit beta-prime, bacterial type / DNA-directed RNA polymerase, beta subunit, external 1 domain / RNA polymerase beta subunit external 1 domain / RNA polymerase, alpha subunit, C-terminal / Bacterial RNA polymerase, alpha chain C terminal domain / DNA-directed RNA polymerase beta subunit, bacterial-type / DNA-directed RNA polymerase, alpha subunit / DNA-directed RNA polymerase, subunit beta-prime / RNA polymerase Rpb6 / RNA polymerase, subunit omega/Rpo6/RPB6 / RNA polymerase Rpb6 / RNA polymerase Rpb2, domain 2 superfamily / RNA polymerase Rpb1, domain 3 superfamily / RPB6/omega subunit-like superfamily / DNA-directed RNA polymerase, insert domain / DNA-directed RNA polymerase, RpoA/D/Rpb3-type / RNA polymerase Rpb3/RpoA insert domain / RNA polymerase Rpb3/Rpb11 dimerisation domain / RNA polymerases D / RNA polymerase Rpb1, clamp domain superfamily / RNA polymerase Rpb1, domain 3 / RNA polymerase Rpb1, domain 3 / RNA polymerase, beta subunit, protrusion / RNA polymerase beta subunit / RNA polymerase Rpb1, domain 1 / RNA polymerase Rpb1, domain 1 / RNA polymerase, alpha subunit / RNA polymerase Rpb1, domain 5 / RNA polymerase Rpb1, domain 4 / RNA polymerase Rpb1, domain 2 / RNA polymerase Rpb1, domain 5 / RNA polymerase Rpb1, domain 4 / DNA-directed RNA polymerase, insert domain superfamily / RNA polymerase Rpb2, domain 2 / RNA polymerase Rpb2, domain 2 / RNA polymerase, N-terminal / RNA polymerase Rpb1, funnel domain superfamily / RNA polymerase I subunit A N-terminus / RNA polymerase, RBP11-like subunit / RNA polymerase, beta subunit, conserved site / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerase Rpb2, OB-fold / RNA polymerase Rpb2, domain 7 / RNA polymerase Rpb2, domain 3 / RNA polymerases beta chain signature. / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain / DNA-directed RNA polymerase, subunit 2 / DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily / RNA polymerase Rpb2, domain 6 / P-loop containing nucleoside triphosphate hydrolase Similarity search - Domain/homology DNA-directed RNA polymerase subunit epsilon / RNA polymerase recycling motor protein HelD / DNA-directed RNA polymerase subunit omega / DNA-directed RNA polymerase subunit delta / DNA-directed RNA polymerase subunit alpha / DNA-directed RNA polymerase subunit beta / DNA-directed RNA polymerase subunit beta' Similarity search - ComponentBiological species Bacillus (Bacillus rRNA group 1)Method single particle reconstruction / cryo EM / Resolution : 3.19 Å Details AuthorsChen M / Jin Q / Yuan S / Liu B Funding support China, 2 items Details Hide detailsOrganization Grant number Country National Natural Science Foundation of China (NSFC) 32270151 China National Natural Science Foundation of China (NSFC) 32270172 China
CitationJournal : To Be Published Title : A phage encoded sigA-dependent transcription inhibitor also attacks host HelD-mediated defence systemAuthors : Chen M / Jin Q / Zhang K / Wang Y / Chen H / Yu Z / Matthews S / Yuan S / Liu B History Deposition Dec 2, 2023 - Header (metadata) release Dec 4, 2024 - Map release Dec 4, 2024 - Update Jun 25, 2025 - Current status Jun 25, 2025 Processing site : PDBj / Status : Released
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