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- EMDB-37699: Axis5 block of Semliki Forest virus VLP in complex with the recep... -
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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Axis5 block of Semliki Forest virus VLP in complex with the receptor VLDLR-LA1-8 | |||||||||
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![]() | Semliki Forest virus VLP / VLDLR / VIRUS LIKE PARTICLE | |||||||||
Biological species | ![]() ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.5 Å | |||||||||
![]() | Zhao ZN / Gao GF | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Structural basis of Semliki Forest virus entry using the very-low-density lipoprotein receptor Authors: Li Y / Zhao Z / Liu S / Wang H / Sun J / Chai Y / Zhou J / Wang Y / Shi Y / Song H / Gao GF | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 98 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 12 KB 12 KB | Display Display | ![]() |
Images | ![]() | 77.4 KB | ||
Filedesc metadata | ![]() | 3.7 KB | ||
Others | ![]() ![]() | 170.2 MB 170.2 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 15.5 KB | Display | |
Data in CIF | ![]() | 18.4 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Voxel size | X=Y=Z: 1.11 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #1
File | emd_37699_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_37699_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Semliki Forest virus VLP in complex with the receptor VLDLR-LA1-8
Entire | Name: Semliki Forest virus VLP in complex with the receptor VLDLR-LA1-8 |
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Components |
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-Supramolecule #1: Semliki Forest virus VLP in complex with the receptor VLDLR-LA1-8
Supramolecule | Name: Semliki Forest virus VLP in complex with the receptor VLDLR-LA1-8 type: complex / ID: 1 / Parent: 0 |
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Source (natural) | Organism: ![]() |
-Supramolecule #2: Semliki Forest virus VLP
Supramolecule | Name: Semliki Forest virus VLP / type: complex / ID: 2 / Parent: 1 |
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Source (natural) | Organism: ![]() ![]() |
-Supramolecule #3: VLDLR
Supramolecule | Name: VLDLR / type: complex / ID: 3 / Parent: 1 |
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Source (natural) | Organism: ![]() |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 8 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 40.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.0 µm / Nominal defocus min: 1.0 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
Startup model | Type of model: NONE |
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Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 3.5 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 452047 |
Initial angle assignment | Type: OTHER |
Final angle assignment | Type: OTHER |