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Yorodumi- EMDB-37190: Five-fold Melbournevirus block (PASR pre-processed K2 counting mo... -
+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-37190 | |||||||||
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Title | Five-fold Melbournevirus block (PASR pre-processed K2 counting mode data) | |||||||||
Map data | Post-processed map 5F Melbournevirus block (PASR pre-processed K2 counting mode data) | |||||||||
Sample |
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Keywords | PASR / post-acquisition super resolution / Melbournevirus / block-based reconstruction / VIRUS | |||||||||
Biological species | Melbournevirus | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.36 Å | |||||||||
Authors | Burton-Smith RN / Murata K | |||||||||
Funding support | Japan, 1 items
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Citation | Journal: To Be Published Title: Five-fold Melbournevirus block (PASR pre-processed K2 counting mode data) Authors: Burton-Smith RN / Murata K | |||||||||
History |
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-Structure visualization
Supplemental images |
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-Downloads & links
-EMDB archive
Map data | emd_37190.map.gz | 222.4 MB | EMDB map data format | |
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Header (meta data) | emd-37190-v30.xml emd-37190.xml | 11.3 KB 11.3 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_37190_fsc.xml | 23.3 KB | Display | FSC data file |
Images | emd_37190.png | 188.3 KB | ||
Filedesc metadata | emd-37190.cif.gz | 3.6 KB | ||
Others | emd_37190_half_map_1.map.gz emd_37190_half_map_2.map.gz | 881.7 MB 877.6 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-37190 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-37190 | HTTPS FTP |
-Validation report
Summary document | emd_37190_validation.pdf.gz | 1.1 MB | Display | EMDB validaton report |
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Full document | emd_37190_full_validation.pdf.gz | 1.1 MB | Display | |
Data in XML | emd_37190_validation.xml.gz | 31.5 KB | Display | |
Data in CIF | emd_37190_validation.cif.gz | 42.8 KB | Display | |
Arichive directory | https://ftp.pdbj.org/pub/emdb/validation_reports/EMD-37190 ftp://ftp.pdbj.org/pub/emdb/validation_reports/EMD-37190 | HTTPS FTP |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_37190.map.gz / Format: CCP4 / Size: 1.1 GB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||
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Annotation | Post-processed map 5F Melbournevirus block (PASR pre-processed K2 counting mode data) | ||||||||||||||||||||||||||||||||||||
Projections & slices | Image control
Images are generated by Spider. | ||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 1.105 Å | ||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: Half-map 1 5F Melbournevirus block (PASR pre-processed K2...
File | emd_37190_half_map_1.map | ||||||||||||
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Annotation | Half-map 1 5F Melbournevirus block (PASR pre-processed K2 counting mode data) | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half-map 2 5F Melbournevirus block (PASR pre-processed K2...
File | emd_37190_half_map_2.map | ||||||||||||
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Annotation | Half-map 2 5F Melbournevirus block (PASR pre-processed K2 counting mode data) | ||||||||||||
Projections & Slices |
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Density Histograms |
-Sample components
-Entire : Melbournevirus
Entire | Name: Melbournevirus |
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Components |
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-Supramolecule #1: Melbournevirus
Supramolecule | Name: Melbournevirus / type: virus / ID: 1 / Parent: 0 / NCBI-ID: 1560514 / Sci species name: Melbournevirus / Virus type: VIRION / Virus isolate: OTHER / Virus enveloped: No / Virus empty: No |
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-Experimental details
-Structure determination
Method | cryo EM |
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Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7.4 |
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Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 26.4 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 2.7 mm / Nominal defocus max: 3.0 µm / Nominal defocus min: 0.8 µm |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |