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- EMDB-37172: Reprocessing of EMPIAR-10216 Apoferritin for PASR validation tests -
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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Reprocessing of EMPIAR-10216 Apoferritin for PASR validation tests | |||||||||
![]() | Post-processed reprocessed ApoF (EMPIAR-10216) | |||||||||
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![]() | PASR / post-acquisition super resolution / apoferritin / reprocessing / METAL BINDING PROTEIN | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 1.71 Å | |||||||||
![]() | Burton-Smith RN / Murata K | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Reprocessing of EMPIAR-10216 Apoferritin for PASR validation tests Authors: Burton-Smith RN / Murata K | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 228.4 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 11.2 KB 11.2 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 14.2 KB | Display | ![]() |
Images | ![]() | 270.7 KB | ||
Filedesc metadata | ![]() | 3.7 KB | ||
Others | ![]() ![]() | 187.7 MB 187.7 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 916 KB | Display | ![]() |
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Full document | ![]() | 915.6 KB | Display | |
Data in XML | ![]() | 21.6 KB | Display | |
Data in CIF | ![]() | 28.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | Post-processed reprocessed ApoF (EMPIAR-10216) | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.517 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: Half-map 1 reprocessed ApoF (EMPIAR-10216)
File | emd_37172_half_map_1.map | ||||||||||||
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Annotation | Half-map 1 reprocessed ApoF (EMPIAR-10216) | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half-map 2 reprocessed ApoF (EMPIAR-10216)
File | emd_37172_half_map_2.map | ||||||||||||
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Annotation | Half-map 2 reprocessed ApoF (EMPIAR-10216) | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Apoferritin (mouse heavy chain)
Entire | Name: Apoferritin (mouse heavy chain) |
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Components |
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-Supramolecule #1: Apoferritin (mouse heavy chain)
Supramolecule | Name: Apoferritin (mouse heavy chain) / type: complex / ID: 1 / Parent: 0 |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 500 KDa |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: FEI FALCON III (4k x 4k) / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 2.7 mm / Nominal defocus max: 1.3 µm / Nominal defocus min: 0.2 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |