[English] 日本語
![](img/lk-miru.gif)
- EMDB-37169: Melbournevirus (whole virus, Bayesian polished reconstruction, re... -
+
Open data
-
Basic information
Entry | ![]() | |||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Title | Melbournevirus (whole virus, Bayesian polished reconstruction, realigned to I1 symmetry) | |||||||||||||||
![]() | Post-processed polished MelbV WHOLEMAP | |||||||||||||||
![]() |
| |||||||||||||||
![]() | Melbournevirus / giant virus / NCLDV / VIRUS | |||||||||||||||
Biological species | ![]() | |||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 4.42 Å | |||||||||||||||
![]() | Burton-Smith RN / Murata K | |||||||||||||||
Funding support | ![]() ![]()
| |||||||||||||||
![]() | ![]() Title: Melbournevirus (whole virus, Bayesian polished reconstruction, realigned to I1 symmetry) Authors: Burton-Smith RN / Murata K | |||||||||||||||
History |
|
-
Structure visualization
Supplemental images |
---|
-
Downloads & links
-EMDB archive
Map data | ![]() | 9.9 GB | ![]() | |
---|---|---|---|---|
Header (meta data) | ![]() ![]() | 14 KB 14 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 50.3 KB | Display | ![]() |
Images | ![]() | 167.2 KB | ||
Filedesc metadata | ![]() | 3.9 KB | ||
Others | ![]() ![]() ![]() | 1.5 GB 9 GB 9 GB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
---|---|---|---|---|
Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 55.2 KB | Display | |
Data in CIF | ![]() | 75.3 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-
Links
EMDB pages | ![]() ![]() |
---|
-
Map
File | ![]() | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Annotation | Post-processed polished MelbV WHOLEMAP | ||||||||||||||||||||
Voxel size | X=Y=Z: 2.21 Å | ||||||||||||||||||||
Density |
| ||||||||||||||||||||
Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
|
-Supplemental data
-Additional map: Post-processed masked polished MelbV WHOLEMAP
File | emd_37169_additional_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Annotation | Post-processed masked polished MelbV WHOLEMAP | ||||||||||||
Projections & Slices |
| ||||||||||||
Density Histograms |
-Half map: Half-map 1 polished MelbV WHOLEMAP
File | emd_37169_half_map_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Annotation | Half-map 1 polished MelbV WHOLEMAP | ||||||||||||
Projections & Slices |
| ||||||||||||
Density Histograms |
-Half map: Half-map 2 polished MelbV WHOLEMAP
File | emd_37169_half_map_2.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Annotation | Half-map 2 polished MelbV WHOLEMAP | ||||||||||||
Projections & Slices |
| ||||||||||||
Density Histograms |
-
Sample components
-Entire : Melbournevirus
Entire | Name: ![]() |
---|---|
Components |
|
-Supramolecule #1: Melbournevirus
Supramolecule | Name: Melbournevirus / type: virus / ID: 1 / Parent: 0 / NCBI-ID: 1560514 / Sci species name: Melbournevirus / Virus type: VIRION / Virus isolate: OTHER / Virus enveloped: No / Virus empty: No |
---|
-Experimental details
-Structure determination
Method | cryo EM |
---|---|
![]() | single particle reconstruction |
Aggregation state | particle |
-
Sample preparation
Buffer | pH: 7.4 |
---|---|
Vitrification | Cryogen name: ETHANE |
-
Electron microscopy
Microscope | FEI TITAN KRIOS |
---|---|
Image recording | Film or detector model: GATAN K2 SUMMIT (4k x 4k) / Average electron dose: 26.4 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 2.7 mm / Nominal defocus max: 3.0 µm / Nominal defocus min: 0.8 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |