+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-36834 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|
Title | csy4+cas1.2 | |||||||||
Map data | ||||||||||
Sample |
| |||||||||
Keywords | IMMUNE SYSTEM-RNA-DNA complex / RNA BINDING PROTEIN/DNA/RNA / RNA BINDING PROTEIN-DNA-RNA complex | |||||||||
Biological species | Pseudomonas aeruginosa (bacteria) | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.2 Å | |||||||||
Authors | Feng Y / Zhang LX | |||||||||
Funding support | China, 1 items
| |||||||||
Citation | Journal: To Be Published Title: Structure of Csy-AcrIF4-dsDNA Authors: Feng Y / Zhang LX | |||||||||
History |
|
-Structure visualization
Supplemental images |
---|
-Downloads & links
-EMDB archive
Map data | emd_36834.map.gz | 4.2 MB | EMDB map data format | |
---|---|---|---|---|
Header (meta data) | emd-36834-v30.xml emd-36834.xml | 13.6 KB 13.6 KB | Display Display | EMDB header |
FSC (resolution estimation) | emd_36834_fsc.xml | 11.3 KB | Display | FSC data file |
Images | emd_36834.png | 44 KB | ||
Filedesc metadata | emd-36834.cif.gz | 3.5 KB | ||
Others | emd_36834_half_map_1.map.gz emd_36834_half_map_2.map.gz | 98.3 MB 98.1 MB | ||
Archive directory | http://ftp.pdbj.org/pub/emdb/structures/EMD-36834 ftp://ftp.pdbj.org/pub/emdb/structures/EMD-36834 | HTTPS FTP |
-Related structure data
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
---|---|
Related items in Molecule of the Month |
-Map
File | Download / File: emd_36834.map.gz / Format: CCP4 / Size: 125 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Voxel size | X=Y=Z: 1.1 Å | ||||||||||||||||||||
Density |
| ||||||||||||||||||||
Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
|
-Supplemental data
-Half map: #1
File | emd_36834_half_map_1.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Half map: #2
File | emd_36834_half_map_2.map | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Projections & Slices |
| ||||||||||||
Density Histograms |
-Sample components
-Entire : Csy-AcrIF4-dsDNA
Entire | Name: Csy-AcrIF4-dsDNA |
---|---|
Components |
|
-Supramolecule #1: Csy-AcrIF4-dsDNA
Supramolecule | Name: Csy-AcrIF4-dsDNA / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#8 |
---|---|
Source (natural) | Organism: Pseudomonas aeruginosa (bacteria) |
-Supramolecule #2: Cas8f
Supramolecule | Name: Cas8f / type: complex / ID: 2 / Parent: 1 / Macromolecule list: #1-#5 |
---|---|
Source (natural) | Organism: Pseudomonas aeruginosa (bacteria) |
-Supramolecule #3: RNA
Supramolecule | Name: RNA / type: complex / ID: 3 / Parent: 1 / Macromolecule list: #6 |
---|---|
Source (natural) | Organism: Pseudomonas aeruginosa (bacteria) |
-Supramolecule #4: DNA
Supramolecule | Name: DNA / type: complex / ID: 4 / Parent: 1 / Macromolecule list: #7-#8 |
---|
-Experimental details
-Structure determination
Method | cryo EM |
---|---|
Processing | single particle reconstruction |
Aggregation state | particle |
-Sample preparation
Buffer | pH: 7 |
---|---|
Vitrification | Cryogen name: ETHANE |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
---|---|
Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: OTHER / Imaging mode: DARK FIELD / Nominal defocus max: 2.0 µm / Nominal defocus min: 1.7 µm |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |