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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Lamprey serum virus-like lectin-LSVL | |||||||||
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Function / homology | Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1 / Fibrinogen beta and gamma chains, C-terminal globular domain / Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain / Fibrinogen-like, C-terminal / Fibrinogen C-terminal domain profile. / carbohydrate binding / Serum lectin![]() | |||||||||
Biological species | ![]() ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.34 Å | |||||||||
![]() | Peng Y | |||||||||
![]() | ![]() Title: Structure of lamprey serum virus-like lectin with high binding capacity, involved in initiation and regulation of innate immunity Authors: Qingwei L / Peng Y | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 9.8 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 8.3 KB 8.3 KB | Display Display | ![]() |
Images | ![]() | 57.4 KB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 411.3 KB | Display | ![]() |
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Full document | ![]() | 410.8 KB | Display | |
Data in XML | ![]() | 6.1 KB | Display | |
Data in CIF | ![]() | 7 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 7e1eMC M: atomic model generated by this map C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
File | ![]() | ||||||||||||||||||||
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Voxel size | X=Y=Z: 1.30654 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
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Sample components
-Entire : lamprey serum virus-like lectin-LSVL
Entire | Name: lamprey serum virus-like lectin-LSVL |
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Components |
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-Supramolecule #1: lamprey serum virus-like lectin-LSVL
Supramolecule | Name: lamprey serum virus-like lectin-LSVL / type: tissue / ID: 1 / Parent: 0 / Macromolecule list: #1 |
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Source (natural) | Organism: ![]() |
-Macromolecule #1: Serum lectin
Macromolecule | Name: Serum lectin / type: protein_or_peptide / ID: 1 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 36.481047 KDa |
Sequence | String: MEASRLLLLL LLPLLLLFCN SVAAACSCTD SCSDAKESES KCGCKHEEET KQLPRSCKEI KLKTKTKEDG VYCLQTKSGQ FYQAFCDMN TNGGGWTLVA SVHENNIAAK CAIGDRWSSQ LGSNPAVGFV DGDRSWANLN TFGRVESATD DDYKNPGYFD V DAEDISVW ...String: MEASRLLLLL LLPLLLLFCN SVAAACSCTD SCSDAKESES KCGCKHEEET KQLPRSCKEI KLKTKTKEDG VYCLQTKSGQ FYQAFCDMN TNGGGWTLVA SVHENNIAAK CAIGDRWSSQ LGSNPAVGFV DGDRSWANLN TFGRVESATD DDYKNPGYFD V DAEDISVW HVPNGTPLAQ WKISSIFRYH TATEFLTPLG GNLYFLYKIF YPLVYGSGTC PASNGPAIPI VYDFGNTISV AS QVCPACL GGTLQGYVHL RVFNNERAPF ALCSGLRVLD NCNTEHYCIG GAGYVPEQTP RQCGDFSAFD WSGIGTHVEW SAS KSLLEA AVFIFYR |
-Macromolecule #2: CALCIUM ION
Macromolecule | Name: CALCIUM ION / type: ligand / ID: 2 / Number of copies: 6 / Formula: CA |
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Molecular weight | Theoretical: 40.078 Da |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | 3D array |
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Sample preparation
Concentration | 2 mg/mL |
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Buffer | pH: 7 |
Vitrification | Cryogen name: NITROGEN / Chamber humidity: 100 % |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K2 QUANTUM (4k x 4k) / Average electron dose: 50.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |
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Image processing
Final reconstruction | Resolution.type: BY AUTHOR / Resolution: 3.34 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 225296 |
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Initial angle assignment | Type: MAXIMUM LIKELIHOOD |
Final angle assignment | Type: MAXIMUM LIKELIHOOD |