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Yorodumi- EMDB-30243: Cardiac Z-disc in Ca+ATP state, F-actin part (see the additional ... -
+Open data
-Basic information
Entry | Database: EMDB / ID: EMD-30243 | |||||||||
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Title | Cardiac Z-disc in Ca+ATP state, F-actin part (see the additional maps for the composite map and other components) | |||||||||
Map data | Central F-actin in Ca ATP state | |||||||||
Sample |
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Biological species | Sus scrofa domesticus (domestic pig) | |||||||||
Method | subtomogram averaging / cryo EM / Resolution: 23.0 Å | |||||||||
Authors | Oda T / Yanagisawa H | |||||||||
Citation | Journal: Commun Biol / Year: 2020 Title: Cryo-electron tomography of cardiac myofibrils reveals a 3D lattice spring within the Z-discs. Authors: Toshiyuki Oda / Haruaki Yanagisawa / Abstract: The Z-disc forms a boundary between sarcomeres, which constitute structural and functional units of striated muscle tissue. Actin filaments from adjacent sarcomeres are cross-bridged by α-actinin in ...The Z-disc forms a boundary between sarcomeres, which constitute structural and functional units of striated muscle tissue. Actin filaments from adjacent sarcomeres are cross-bridged by α-actinin in the Z-disc, allowing transmission of tension across the myofibril. Despite decades of studies, the 3D structure of Z-disc has remained elusive due to the limited resolution of conventional electron microscopy. Here, we observed porcine cardiac myofibrils using cryo-electron tomography and reconstructed the 3D structures of the actin-actinin cross-bridging complexes within the Z-discs in relaxed and activated states. We found that the α-actinin dimers showed contraction-dependent swinging and sliding motions in response to a global twist in the F-actin lattice. Our observation suggests that the actin-actinin complex constitutes a molecular lattice spring, which maintains the integrity of the Z-disc during the muscle contraction cycle. | |||||||||
History |
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-Structure visualization
Movie |
Movie viewer |
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Structure viewer | EM map: SurfViewMolmilJmol/JSmol |
Supplemental images |
-Downloads & links
-EMDB archive
-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data |
-Links
EMDB pages | EMDB (EBI/PDBe) / EMDataResource |
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-Map
File | Download / File: emd_30243.map.gz / Format: CCP4 / Size: 30.5 MB / Type: IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Annotation | Central F-actin in Ca ATP state | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Voxel size | X=Y=Z: 5.34 Å | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Details | EMDB XML:
CCP4 map header:
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-Supplemental data
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Opposite-polarity F-actin in Ca ATP state
+Additional map: Opposite-polarity F-actin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Composite map of entire actin-actinin complex in Ca ATP state
+Additional map: Opposite-polarity F-actin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Opposite-polarity F-actin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
+Additional map: Alpha-Actinin in Ca ATP state
-Sample components
-Entire : Central F-actin in Ca+ATP state
Entire | Name: Central F-actin in Ca+ATP state |
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Components |
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-Supramolecule #1: Central F-actin in Ca+ATP state
Supramolecule | Name: Central F-actin in Ca+ATP state / type: organelle_or_cellular_component / ID: 1 / Parent: 0 Details: Body of the central F-actin in Ca+ATP state (see the additional maps for the composite map and actinin maps) |
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Source (natural) | Organism: Sus scrofa domesticus (domestic pig) / Organ: Heart / Organelle: Z-disc |
-Experimental details
-Structure determination
Method | cryo EM |
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Processing | subtomogram averaging |
Aggregation state | tissue |
-Sample preparation
Concentration | 0.05 mg/mL |
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Buffer | pH: 7.2 |
Grid | Model: Homemade / Material: COPPER / Mesh: 300 / Support film - Material: CARBON / Support film - topology: HOLEY / Pretreatment - Type: GLOW DISCHARGE / Pretreatment - Atmosphere: AIR |
Vitrification | Cryogen name: ETHANE / Chamber humidity: 99 % / Instrument: FEI VITROBOT MARK IV |
Details | Cardiac myofibrils |
-Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: FIELD EMISSION GUN |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELDBright-field microscopy / Nominal defocus max: 2.0 µm / Nominal defocus min: 1.0 µm |
Specialist optics | Phase plate: VOLTA PHASE PLATE / Energy filter - Name: GIF Quantum LS / Energy filter - Slit width: 20 eV |
Sample stage | Cooling holder cryogen: NITROGEN |
Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 100.0 e/Å2 |
Experimental equipment | Model: Titan Krios / Image courtesy: FEI Company |