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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | KLH1 Hemocyanin | |||||||||
![]() | KLH1 density map | |||||||||
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![]() | Cryo-TEM / Image reconstruction / OXYGEN BINDING | |||||||||
Biological species | ![]() | |||||||||
Method | single particle reconstruction / cryo EM / Resolution: 2.7 Å | |||||||||
![]() | Sen A / Hosogi N / Brink J | |||||||||
Funding support | 1 items
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![]() | ![]() Title: KLH1 Hemocyanin Authors: Sen A / Hosogi N / Brink J | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 228.7 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 11 KB 11 KB | Display Display | ![]() |
Images | ![]() | 125.6 KB | ||
Filedesc metadata | ![]() | 3.5 KB | ||
Others | ![]() ![]() | 40.2 MB 40.2 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1.1 MB | Display | ![]() |
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Full document | ![]() | 1.1 MB | Display | |
Data in XML | ![]() | 16.8 KB | Display | |
Data in CIF | ![]() | 19.1 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | KLH1 density map | ||||||||||||||||||||
Voxel size | X=Y=Z: 1.3037 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: Half map of KLH1
File | emd_29937_half_map_1.map | ||||||||||||
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Annotation | Half map of KLH1 | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: Half map of KLH1
File | emd_29937_half_map_2.map | ||||||||||||
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Annotation | Half map of KLH1 | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Keyhole limpet hemocyanin 1
Entire | Name: Keyhole limpet hemocyanin 1 |
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Components |
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-Supramolecule #1: Keyhole limpet hemocyanin 1
Supramolecule | Name: Keyhole limpet hemocyanin 1 / type: organelle_or_cellular_component / ID: 1 / Parent: 0 |
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Source (natural) | Organism: ![]() |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.4 |
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Vitrification | Cryogen name: ETHANE / Chamber humidity: 85 % / Chamber temperature: 10 K |
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Electron microscopy
Microscope | JEOL CRYO ARM 200 |
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Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 30.0 e/Å2 |
Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 3.0 µm / Nominal defocus min: 0.1 µm |
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Image processing
Startup model | Type of model: OTHER |
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Final reconstruction | Applied symmetry - Point group: D5 (2x5 fold dihedral) / Resolution.type: BY AUTHOR / Resolution: 2.7 Å / Resolution method: FSC 0.143 CUT-OFF / Number images used: 42537 |
Initial angle assignment | Type: MAXIMUM LIKELIHOOD |
Final angle assignment | Type: MAXIMUM LIKELIHOOD |