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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Tail of P1 bacteriophage | |||||||||
![]() | Tail of P1 bacteriophage | |||||||||
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![]() | phage tail / helical / cryo-TEM / CONTRACTILE PROTEIN | |||||||||
Biological species | ![]() | |||||||||
Method | helical reconstruction / cryo EM / Resolution: 3.53 Å | |||||||||
![]() | Sen A / Bhatt V / Kim K / Bouchet-Marquis C | |||||||||
Funding support | ![]()
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![]() | ![]() Title: Tail of P1 bacteriophage Authors: Sen A / Bhatt V / Kim K / Bouchet-Marquis C | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 483.8 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 13 KB 13 KB | Display Display | ![]() |
Images | ![]() | 209.8 KB | ||
Filedesc metadata | ![]() | 4.7 KB | ||
Others | ![]() ![]() | 77.4 MB 77.4 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 954.8 KB | Display | ![]() |
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Full document | ![]() | 954.4 KB | Display | |
Data in XML | ![]() | 19.1 KB | Display | |
Data in CIF | ![]() | 22.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | Tail of P1 bacteriophage | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.69445 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: half map of Tail of P1 bacteriophage
File | emd_27714_half_map_1.map | ||||||||||||
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Annotation | half map of Tail of P1 bacteriophage | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: half map of Tail of P1 bacteriophage
File | emd_27714_half_map_2.map | ||||||||||||
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Annotation | half map of Tail of P1 bacteriophage | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Escherichia phage P1
Entire | Name: ![]() |
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Components |
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-Supramolecule #1: Escherichia phage P1
Supramolecule | Name: Escherichia phage P1 / type: virus / ID: 1 / Parent: 0 / Macromolecule list: all / NCBI-ID: 2886926 / Sci species name: Escherichia phage P1 / Virus type: VIRION / Virus isolate: OTHER / Virus enveloped: No / Virus empty: No |
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-Macromolecule #1: Phage tail protein
Macromolecule | Name: Phage tail protein / type: other / ID: 1 / Classification: other |
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Source (natural) | Organism: ![]() |
Sequence | String: MQRSWFNHRL TSAKQKSLLY KSLADLVQSM MDTFVDPWLE RITN RKSIF SMSKEDLETR TNELGQFFTI RTSNSSSVPM LLQQRLDEIH FKGTERPINQ TIY REFNGI SVLWDPIYAP VDLERHPYGT VLIPESTLET TGGTFGEMFL TSRGMISIPI ND LARTMGI ...String: MQRSWFNHRL TSAKQKSLLY KSLADLVQSM MDTFVDPWLE RITN RKSIF SMSKEDLETR TNELGQFFTI RTSNSSSVPM LLQQRLDEIH FKGTERPINQ TIY REFNGI SVLWDPIYAP VDLERHPYGT VLIPESTLET TGGTFGEMFL TSRGMISIPI ND LARTMGI TGTIDQSAIT EEILRKFNQF VKPLLPLHIV FDGLTLYLSV VVNEHADMIT L NEISDTEK AYCWFETSDT TSLTGVTSIS APITATPGGT IVKATPTFDR TRADDLLLDS DA |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | helical reconstruction |
Aggregation state | helical array |
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Sample preparation
Buffer | pH: 7.4 |
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Grid | Model: C-flat-1.2/1.3 / Pretreatment - Type: GLOW DISCHARGE |
Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | TFS GLACIOS |
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Image recording | Film or detector model: FEI FALCON IV (4k x 4k) / Average exposure time: 9.4 sec. / Average electron dose: 30.0 e/Å2 |
Electron beam | Acceleration voltage: 200 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 1.5 µm / Nominal defocus min: 0.5 µm / Nominal magnification: 73000 |
Sample stage | Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER |
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Image processing
Final reconstruction | Applied symmetry - Helical parameters - Δz: 39.15 Å Applied symmetry - Helical parameters - Δ&Phi: 19.32 ° Applied symmetry - Helical parameters - Axial symmetry: C6 (6 fold cyclic) Resolution.type: BY AUTHOR / Resolution: 3.53 Å / Resolution method: FSC 0.143 CUT-OFF / Software - Name: cryoSPARC / Number images used: 119472 |
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Startup model | Type of model: OTHER |
Final angle assignment | Type: NOT APPLICABLE |