- EMDB-18946: Cryo-EM structure of the FIGNL1 AAA hexamer bound to RAD51 -
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Entry
Database: EMDB / ID: EMD-18946
Title
Cryo-EM structure of the FIGNL1 AAA hexamer bound to RAD51
Map data
An unsharpened post-processed map of the FIGNL1-RAD51 complex from RELION 4.0
Sample
Complex: FIGNL1 hexamer bound to the N-terminus of RAD51
Protein or peptide: Fidgetin-like protein 1
Protein or peptide: DNA repair protein RAD51 homolog 1
Ligand: MAGNESIUM ION
Ligand: ADENOSINE-5'-TRIPHOSPHATE
Ligand: ADENOSINE-5'-DIPHOSPHATE
Keywords
AAA / ATPase / DNA repair / HYDROLASE
Function / homology
Function and homology information
microtubule severing ATPase activity / presynaptic intermediate filament cytoskeleton / mitotic recombination-dependent replication fork processing / osteoblast proliferation / chromosome organization involved in meiotic cell cycle / cellular response to camptothecin / telomere maintenance via telomere lengthening / positive regulation of DNA ligation / male meiotic nuclear division / nuclear ubiquitin ligase complex ...microtubule severing ATPase activity / presynaptic intermediate filament cytoskeleton / mitotic recombination-dependent replication fork processing / osteoblast proliferation / chromosome organization involved in meiotic cell cycle / cellular response to camptothecin / telomere maintenance via telomere lengthening / positive regulation of DNA ligation / male meiotic nuclear division / nuclear ubiquitin ligase complex / double-strand break repair involved in meiotic recombination / cellular response to hydroxyurea / DNA recombinase assembly / lateral element / replication-born double-strand break repair via sister chromatid exchange / telomere maintenance via recombination / DNA strand invasion / regulation of DNA damage checkpoint / mitotic recombination / Impaired BRCA2 binding to PALB2 / DNA strand exchange activity / single-stranded DNA helicase activity / reciprocal meiotic recombination / Defective homologous recombination repair (HRR) due to BRCA1 loss of function / Defective HDR through Homologous Recombination Repair (HRR) due to PALB2 loss of BRCA1 binding function / Defective HDR through Homologous Recombination Repair (HRR) due to PALB2 loss of BRCA2/RAD51/RAD51C binding function / Homologous DNA Pairing and Strand Exchange / Resolution of D-loop Structures through Synthesis-Dependent Strand Annealing (SDSA) / Resolution of D-loop Structures through Holliday Junction Intermediates / ATP-dependent DNA damage sensor activity / HDR through Single Strand Annealing (SSA) / Impaired BRCA2 binding to RAD51 / regulation of double-strand break repair via homologous recombination / nuclear chromosome / DNA unwinding involved in DNA replication / replication fork processing / Transcriptional Regulation by E2F6 / Presynaptic phase of homologous DNA pairing and strand exchange / ATP-dependent activity, acting on DNA / interstrand cross-link repair / DNA polymerase binding / negative regulation of intrinsic apoptotic signaling pathway / condensed chromosome / ATP metabolic process / condensed nuclear chromosome / male germ cell nucleus / meiotic cell cycle / cellular response to ionizing radiation / Hydrolases; Acting on acid anhydrides; Acting on acid anhydrides to facilitate cellular and subcellular movement / regulation of protein phosphorylation / double-strand break repair via homologous recombination / HDR through Homologous Recombination (HRR) / PML body / Meiotic recombination / osteoblast differentiation / site of double-strand break / single-stranded DNA binding / double-stranded DNA binding / DNA recombination / chromosome, telomeric region / regulation of cell cycle / hydrolase activity / mitochondrial matrix / DNA repair / centrosome / DNA damage response / chromatin binding / chromatin / nucleolus / negative regulation of apoptotic process / perinuclear region of cytoplasm / enzyme binding / magnesium ion binding / ATP hydrolysis activity / protein-containing complex / mitochondrion / extracellular exosome / nucleoplasm / ATP binding / identical protein binding / nucleus / cytosol / cytoplasm Similarity search - Function
: / DNA recombination/repair protein Rad51 / Vps4 oligomerisation, C-terminal / : / Vps4 C terminal oligomerisation domain / DNA recombination and repair protein, RecA-like / DNA recombination and repair protein Rad51-like, C-terminal / Rad51 / DNA recombination and repair protein RecA, monomer-monomer interface / RecA family profile 2. ...: / DNA recombination/repair protein Rad51 / Vps4 oligomerisation, C-terminal / : / Vps4 C terminal oligomerisation domain / DNA recombination and repair protein, RecA-like / DNA recombination and repair protein Rad51-like, C-terminal / Rad51 / DNA recombination and repair protein RecA, monomer-monomer interface / RecA family profile 2. / DNA recombination and repair protein RecA-like, ATP-binding domain / RecA family profile 1. / DNA repair Rad51/transcription factor NusA, alpha-helical / Helix-hairpin-helix domain / AAA ATPase, AAA+ lid domain / AAA+ lid domain / ATPase, AAA-type, conserved site / AAA-protein family signature. / ATPase family associated with various cellular activities (AAA) / ATPase, AAA-type, core / ATPases associated with a variety of cellular activities / AAA+ ATPase domain / P-loop containing nucleoside triphosphate hydrolase Similarity search - Domain/homology
Journal: bioRxiv / Year: 2024 Title: Molecular basis of FIGNL1 in dissociating RAD51 from DNA and chromatin. Authors: Alexander Carver / Tai-Yuan Yu / Luke A Yates / Travis White / Raymond Wang / Katie Lister / Maria Jasin / Xiaodong Zhang / Abstract: Maintaining genome integrity is an essential and challenging process. RAD51 recombinase, the central player of several crucial processes in repairing and protecting genome integrity, forms filaments ...Maintaining genome integrity is an essential and challenging process. RAD51 recombinase, the central player of several crucial processes in repairing and protecting genome integrity, forms filaments on DNA. RAD51 filaments are tightly regulated. One of these regulators is FIGNL1, that prevents persistent RAD51 foci post-damage and genotoxic chromatin association in cells. The cryogenic electron microscopy structure of FIGNL1 in complex with RAD51 reveals that the FIGNL1 forms a non-planar hexamer and RAD51 N-terminus is enclosed in the FIGNL1 hexamer pore. Mutations in pore loop or catalytic residues of FIGNL1 render it defective in filament disassembly and are lethal in mouse embryonic stem cells. Our study reveals a unique mechanism for removing RAD51 from DNA and provides the molecular basis for FIGNL1 in maintaining genome stability.
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