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Open data
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Basic information
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Title | Triangle 1 v1 for DNA ORIGAMI TRAPS FOR LARGE VIRUSES | |||||||||||||||
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![]() | DNA origami / high-order assemblies / antivirals / virus trapping / DNA | |||||||||||||||
Biological species | ![]() | |||||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 18.0 Å | |||||||||||||||
![]() | Monferrer A / Kohler F / Sigl C / Schachtner M / Peterhoff D / Asbach B / Wagner R / Dietz H | |||||||||||||||
Funding support | European Union, ![]()
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![]() | ![]() Title: DNA ORIGAMI TRAPS FOR LARGE VIRUSES Authors: Monferrer A / Kohler F / Sigl C / Schachtner M / Peterhoff D / Asbach B / Wagner R / Dietz H | |||||||||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 3.2 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 15.1 KB 15.1 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 7.2 KB | Display | ![]() |
Images | ![]() | 73.9 KB | ||
Others | ![]() ![]() | 23.4 MB 23.4 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 577 KB | Display | ![]() |
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Full document | ![]() | 576.6 KB | Display | |
Data in XML | ![]() | 13 KB | Display | |
Data in CIF | ![]() | 18 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Voxel size | X=Y=Z: 6.84 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #1
File | emd_16236_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_16236_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : DNA Origami
Entire | Name: DNA Origami |
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Components |
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-Supramolecule #1: DNA Origami
Supramolecule | Name: DNA Origami / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#2 |
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-Supramolecule #2: scaffold DNA single-strand
Supramolecule | Name: scaffold DNA single-strand / type: complex / ID: 2 / Parent: 1 / Details: 8064 bases |
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Source (natural) | Organism: ![]() |
-Supramolecule #3: staple ssDNA oligonucleotides
Supramolecule | Name: staple ssDNA oligonucleotides / type: complex / ID: 3 / Parent: 1 / Details: chemically synthesized |
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Source (natural) | Organism: synthetic construct (others) |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 8 |
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Grid | Model: C-flat-1.2/1.3 / Material: COPPER / Mesh: 400 / Support film - Material: CARBON / Support film - topology: HOLEY / Pretreatment - Type: GLOW DISCHARGE / Pretreatment - Atmosphere: AIR |
Vitrification | Cryogen name: ETHANE / Chamber humidity: 100 % / Instrument: FEI VITROBOT MARK IV |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: FEI FALCON III (4k x 4k) / Detector mode: INTEGRATING / Digitization - Dimensions - Width: 4096 pixel / Digitization - Dimensions - Height: 4096 pixel / Average electron dose: 58.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Cs: 0.01 mm / Nominal defocus max: 2.5 µm / Nominal defocus min: 1.0 µm / Nominal magnification: 29000 |
Sample stage | Specimen holder model: FEI TITAN KRIOS AUTOGRID HOLDER / Cooling holder cryogen: NITROGEN |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |