BIRD-PRD_002277: Klebsazolicin

Basic information

• Entry: Database: Biologically Interesting Molecule Reference Dictionary (BIRD) / ID: PRD_002277
• Status: Status: REF ONLY
• Name: Klebsazolicin

BIRD information

• Type: Peptide-like / Antibiotic
• Downloads: Molecular definition / Chemical definition

Source

• Klebsiella pneumoniae subsp. ozaenae (bacteria), :

Chemical information

Composition

Formula: C₆₄H₉₃N₂₃O₂₅S₃ / Formula weight: 1680.757

• Others: Type: peptide-like

History

• External links: UniChem / ChemSpider / Wikipedia search / Google search

Details

SMILES

• ACDLabs 12.01: C1(=NC(CO)C(NC1CCC(=O)N)=O)NC(C(=O)N6C(C(=O)NCC(=O)NC(C2SC=C(N2)C(=O)NC(C(=O)NC(C5NC(C(=O)NC(C(=O)NC(C3OCC(N3)C(=O)NC(C(=O)NC(C(=O)NC(C(=O)NC(C4NC(C(=O)NC(C=O)C(O)C)=CS4)CC(=O)N)C)CO)C)CC(=O)N)CO)=CS5)CO)C)CC(=O)N)CCC6)CO
• CACTVS 3.385: C[CH](O)[CH](NC(=O)C1=CS[C](N1)[CH](CC(N)=O)NC(=O)[CH](C)NC(=O)[CH](CO)NC(=O)[CH](C)NC(=O)[CH]2CO[C](N2)[CH](CC(N)=O)NC(=O)[CH](CO)NC(=O)C3=CS[C](N3)[CH](CO)NC(=O)[CH](C)NC(=O)C4=CS[C](N4)[CH](CC(N)=O)NC(=O)CNC(=O)[CH]5CCCN5C(=O)[CH](CO)NC6=N[CH](CO)C(=O)N[CH]6CCC(N)=O)C=O
• OpenEye OEToolkits 2.0.6: CC(C(C=O)NC(=O)C1=CS[C](N1)C(CC(=O)N)NC(=O)C(C)NC(=O)C(CO)NC(=O)C(C)NC(=O)C2CO[C](N2)C(CC(=O)N)NC(=O)C(CO)NC(=O)C3=CS[C](N3)C(CO)NC(=O)C(C)NC(=O)C4=CS[C](N4)C(CC(=O)N)NC(=O)CNC(=O)C5CCCN5C(=O)C(CO)NC6=NC(C(=O)NC6CCC(=O)N)CO)O

SMILES CANONICAL

• CACTVS 3.385: C[C@H](O)[C@H](NC(=O)C1=CS[C](N1)[C@H](CC(N)=O)NC(=O)[C@H](C)NC(=O)[C@H](CO)NC(=O)[C@H](C)NC(=O)[C@H]2CO[C](N2)[C@H](CC(N)=O)NC(=O)[C@H](CO)NC(=O)C3=CS[C](N3)[C@H](CO)NC(=O)[C@H](C)NC(=O)C4=CS[C](N4)[C@H](CC(N)=O)NC(=O)CNC(=O)[C@@H]5CCCN5C(=O)[C@H](CO)NC6=N[C@@H](CO)C(=O)N[C@H]6CCC(N)=O)C=O
• OpenEye OEToolkits 2.0.6: C[C@@H]([C@@H](C=O)NC(=O)C1=CS[C](N1)[C@H](CC(=O)N)NC(=O)[C@H](C)NC(=O)[C@H](CO)NC(=O)[C@H](C)NC(=O)C2CO[C](N2)[C@H](CC(=O)N)NC(=O)[C@H](CO)NC(=O)C3=CS[C](N3)[C@H](CO)NC(=O)[C@H](C)NC(=O)C4=CS[C](N4)[C@H](CC(=O)N)NC(=O)CNC(=O)[C@@H]5CCCN5C(=O)[C@H](CO)NC6=N[C@H](C(=O)N[C@H]6CCC(=O)N)CO)O

SYSTEMATIC NAME

• ACDLabs 12.01: N-{(2S,4R)-2-[(1R)-3-amino-1-({N-[(2R)-2-{(1R)-1-[(N-{(2S)-2-[(1S)-3-amino-1-({N-[(3S,6R)-3-(3-amino-3-oxopropyl)-6-(hydroxymethyl)-5-oxo-3,4,5,6-tetrahydropyrazin-2-yl]-L-seryl-L-prolylglycyl}amino)-3-oxopropyl]-2,3-dihydro-1,3-thiazole-4-carbonyl}-L-alanyl)amino]-2-hydroxyethyl}-2,3-dihydro-1,3-thiazole-4-carbonyl]-L-seryl}amino)-3-oxopropyl]-1,3-oxazolidine-4-carbonyl}-L-alanyl-L-seryl-N-{(1S)-3-amino-1-[(2S)-4-{[(2S,3S)-3-hydroxy-1-oxobutan-2-yl]carbamoyl}-2,3-dihydro-1,3-thiazol-2-yl]-3-oxopropyl}-L-alaninamide
• OpenEye OEToolkits 2.0.6: 2-[(1~{S})-3-azanyl-1-[[(2~{S})-2-[[2-[(1~{S})-1-[[(2~{S})-2-[[2-[(1~{S})-3-azanyl-1-[2-[[(2~{S})-1-[(2~{S})-2-[[(2~{S},5~{S})-2-(3-azanyl-3-oxidanylidene-propyl)-5-(hydroxymethyl)-6-oxidanylidene-2,5-dihydro-1~{H}-pyrazin-3-yl]amino]-3-oxidanyl-propanoyl]pyrrolidin-2-yl]carbonylamino]ethanoylamino]-3-oxidanylidene-propyl]-3~{H}-1,3-thiazol-4-yl]carbonylamino]propanoyl]amino]-2-oxidanyl-ethyl]-3~{H}-1,3-thiazol-4-yl]carbonylamino]-3-oxidanyl-propanoyl]amino]-3-oxidanylidene-propyl]-~{N}-[(2~{S})-1-[[(2~{S})-1-[[(2~{S})-1-[[(1~{S})-3-azanyl-3-oxidanylidene-1-[4-[[(2~{S},3~{S})-3-oxidanyl-1-oxidanylidene-butan-2-yl]carbamoyl]-3~{H}-1,3-thiazol-2-yl]propyl]amino]-1-oxidanylidene-propan-2-yl]amino]-3-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-propan-2-yl]-4,5-dihydro-3~{H}-1,3-oxazole-4-carboxamide

PDB entries

Showing all 1 items

PDB-5w4k:
Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution