ChemComp-Y4D: (1R,2S)-2-((S)-2-(((((1R,3s,5S)-bicyclo[3.3.1]nonan-3-yl)methoxy)...

Basic information

• Entry: Database: PDB chemical components / ID: Y4D
• Name: Name: (1R,2S)-2-((S)-2-(((((1R,3s,5S)-bicyclo[3.3.1]nonan-3-yl)methoxy)carbonyl)amino)-4-methylpentanamido)-1-hydroxy-3-((S)-2-oxopyrrolidin-3-yl)propane-1-sulfonic acid

Chemical information

Composition

Formula: C₂₄H₄₁N₃O₈S / Number of atoms: 77 / Formula weight: 531.663 / Formal charge: 0

Others

7lku

Type: non-polymer / PDB classification: HETAIN / Three letter code: Y4D / Ideal coordinates details: Corina / Model coordinates PDB-ID: 7LKU

History

Create component	Feb 3, 2021
Other modification	Feb 4, 2021
Other modification	Feb 8, 2021
Modify name	Feb 9, 2021
Initial release	Feb 17, 2021

• External links: UniChem / ChemSpider / Wikipedia search / Google search

Details

SMILES

• CACTVS 3.385: CC(C)C[CH](NC(=O)OC[CH]1C[CH]2CCC[CH](C2)C1)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S](O)(=O)=O
• OpenEye OEToolkits 2.0.7: CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCC2CC3CCCC(C3)C2

SMILES CANONICAL

• CACTVS 3.385: CC(C)C[C@H](NC(=O)OC[C@H]1C[C@H]2CCC[C@H](C2)C1)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S](O)(=O)=O
• OpenEye OEToolkits 2.0.7: CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCC2C[C@@H]3CCC[C@@H](C3)C2

InChI

• InChI 1.03: InChI=1S/C24H41N3O8S/c1-14(2)8-19(27-24(31)35-13-17-10-15-4-3-5-16(9-15)11-17)22(29)26-20(23(30)36(32,33)34)12-18-6-7-25-21(18)28/h14-20,23,30H,3-13H2,1-2H3,(H,25,28)(H,26,29)(H,27,31)(H,32,33,34)/t15-,16+,17-,18-,19-,20-,23+/m0/s1

InChIKey

• InChI 1.03: PGYROSRJIVXTOE-ZDCSSWJMSA-N

PDB entries

Showing all 2 items

PDB-7lkr:
1.65 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 2a

PDB-7lku:
1.65 A resolution structure of SARS-CoV-2 3CL protease in complex with inhibitor 3b (deuterated analog of inhibitor 2a)