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- ChemComp-UK3: (2~{R})-~{N}-[(2~{R})-6-azanyl-1-[[(2~{R})-1-[[(2~{R})-1-[[3-[1-[... -

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Basic information

EntryDatabase: PDB chemical components / ID: UK3
NameName: (2~{R})-~{N}-[(2~{R})-6-azanyl-1-[[(2~{R})-1-[[(2~{R})-1-[[3-[1-[4-[(1~{S},2~{R},5~{S},7~{R},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl- ...Name: (2~{R})-~{N}-[(2~{R})-6-azanyl-1-[[(2~{R})-1-[[(2~{R})-1-[[3-[1-[4-[(1~{S},2~{R},5~{S},7~{R},8~{R},9~{R},11~{R},13~{R},14~{R})-8-[(2~{S},3~{R},4~{S},6~{R})-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-2-ethyl-5-fluoranyl-9-methoxy-1,5,7,11,13-pentamethyl-4,6,12,16-tetrakis(oxidanylidene)-3,17-dioxa-15-azabicyclo[12.3.0]heptadecan-15-yl]butyl]-1,2,3-triazol-4-yl]phenyl]amino]-4-methylsulfanyl-1-oxidanylidene-butan-2-yl]amino]-3-(4-hydroxyphenyl)-1-oxidanylidene-propan-2-yl]amino]-1-oxidanylidene-hexan-2-yl]-1-[(2~{R})-2-[[(2~{R})-2-[2-[[2,3-bis(oxidanyl)phenyl]carbonyl-[4-[[2,3-bis(oxidanyl)phenyl]carbonylamino]butyl]amino]ethanoylamino]-3-(1~{H}-indol-3-yl)propanoyl]amino]-3-oxidanyl-propanoyl]pyrrolidine-2-carboxamide

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Chemical information

Composition
Formula: C101H135FN16O25S / Number of atoms: 279 / Formula weight: 2024.308 / Formal charge: 0
Others

8e3l

Type: non-polymer / PDB classification: HETAIN / Three letter code: UK3 / Ideal coordinates details: Corina / Model coordinates PDB-ID: 8E3L
History
Create componentAug 19, 2022
Initial releaseJun 28, 2023
External linksUniChem / ChemSpider / PubChem / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

CACTVS 3.385CC[CH]1OC(=O)[C](C)(F)C(=O)[CH](C)[CH](O[CH]2O[CH](C)C[CH]([CH]2O)N(C)C)[CH](C[CH](C)C(=O)[CH](C)[CH]3N(CCCCn4cc(nn4)c5cccc(NC(=O)[CH](CCSC)NC(=O)[CH](Cc6ccc(O)cc6)NC(=O)[CH](CCCCN)NC(=O)[CH]7CCCN7C(=O)[CH](CO)NC(=O)[CH](Cc8c[nH]c9ccccc89)NC(=O)CN(CCCCNC(=O)c%10cccc(O)c%10O)C(=O)c%11cccc(O)c%11O)c5)C(=O)O[C]13C)OC
OpenEye OEToolkits 2.0.7CCC1C2(C(C(C(=O)C(CC(C(C(C(=O)C(C(=O)O1)(C)F)C)OC3C(C(CC(O3)C)N(C)C)O)OC)C)C)N(C(=O)O2)CCCCn4cc(nn4)c5cccc(c5)NC(=O)C(CCSC)NC(=O)C(Cc6ccc(cc6)O)NC(=O)C(CCCCN)NC(=O)C7CCCN7C(=O)C(CO)NC(=O)C(Cc8c[nH]c9c8cccc9)NC(=O)CN(CCCCNC(=O)c1cccc(c1O)O)C(=O)c1cccc(c1O)O)C

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SMILES CANONICAL

CACTVS 3.385CC[C@H]1OC(=O)[C@@](C)(F)C(=O)[C@H](C)[C@@H](O[C@@H]2O[C@H](C)C[C@@H]([C@H]2O)N(C)C)[C@@H](C[C@@H](C)C(=O)[C@H](C)[C@H]3N(CCCCn4cc(nn4)c5cccc(NC(=O)[C@@H](CCSC)NC(=O)[C@@H](Cc6ccc(O)cc6)NC(=O)[C@@H](CCCCN)NC(=O)[C@H]7CCCN7C(=O)[C@@H](CO)NC(=O)[C@@H](Cc8c[nH]c9ccccc89)NC(=O)CN(CCCCNC(=O)c%10cccc(O)c%10O)C(=O)c%11cccc(O)c%11O)c5)C(=O)O[C@]13C)OC
OpenEye OEToolkits 2.0.7CC[C@@H]1[C@@]2([C@@H]([C@H](C(=O)[C@@H](C[C@H]([C@@H]([C@H](C(=O)[C@](C(=O)O1)(C)F)C)O[C@H]3[C@@H]([C@H](C[C@H](O3)C)N(C)C)O)OC)C)C)N(C(=O)O2)CCCCn4cc(nn4)c5cccc(c5)NC(=O)[C@@H](CCSC)NC(=O)[C@@H](Cc6ccc(cc6)O)NC(=O)[C@@H](CCCCN)NC(=O)[C@H]7CCCN7C(=O)[C@@H](CO)NC(=O)[C@@H](Cc8c[nH]c9c8cccc9)NC(=O)CN(CCCCNC(=O)c1cccc(c1O)O)C(=O)c1cccc(c1O)O)C

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InChI

InChI 1.06InChI=1S/C101H135FN16O25S/c1-12-80-101(7)87(58(4)82(124)56(2)47-79(139-10)86(59(5)88(128)100(6,102)98(137)141-80)142-97-85(127)76(114(8)9)48-57(3)140-97)118(99(138)143-101)44-20-19-43-116-53-73(112-113-116)61-25-21-26-63(50-61)106-90(130)70(39-46-144-11)108-92(132)71(49-60-35-37-64(120)38-36-60)110-91(131)69(31-15-16-40-103)109-94(134)75-32-24-45-117(75)96(136)74(55-119)111-93(133)72(51-62-52-105-68-30-14-13-27-65(62)68)107-81(123)54-115(95(135)67-29-23-34-78(122)84(67)126)42-18-17-41-104-89(129)66-28-22-33-77(121)83(66)125/h13-14,21-23,25-30,33-38,50,52-53,56-59,69-72,74-76,79-80,85-87,97,105,119-122,125-127H,12,15-20,24,31-32,39-49,51,54-55,103H2,1-11H3,(H,104,129)(H,106,130)(H,107,123)(H,108,132)(H,109,134)(H,110,131)(H,111,133)/t56-,57-,58+,59-,69-,70-,71-,72-,74-,75-,76+,79-,80-,85-,86-,87-,97+,100+,101-/m1/s1

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InChIKey

InChI 1.06CELYJJFZBWFIMS-JTHPDSKOSA-N

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PDB entries

Showing all 1 items

PDB-8e3l:
E. coli 50S ribosome bound to D-linker solithromycin conjugate

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