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- ChemComp-SEJ: beta-D-arabinopyranose -

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Basic information

EntryDatabase: PDB chemical components / ID: SEJ
NameName: beta-D-arabinopyranose / Synonyms: beta-D-arabinose; D-arabinose; arabinose

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Chemical information

Composition
Formula: C5H10O5 / Number of atoms: 20 / Formula weight: 150.13 / Formal charge: 0
OthersType: D-saccharide, beta linking / PDB classification: ATOMS / Three letter code: SEJ / Ideal coordinates details: Corina
History
Create componentMar 6, 2020
Other modificationJun 3, 2020
Other modificationJun 10, 2020
Other modificationJul 3, 2020
Modify component atom idJul 17, 2020
Initial releaseJul 29, 2020
External linksUniChem / ChemSpider / Wikipedia search / Google search

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Details

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SMILES

CACTVS 3.385O[CH]1CO[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 2.0.7C1C(C(C(C(O1)O)O)O)O

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SMILES CANONICAL

CACTVS 3.385O[C@@H]1CO[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 2.0.7C1[C@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O

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InChI

InChI 1.03InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3-,4+,5-/m1/s1

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InChIKey

InChI 1.03SRBFZHDQGSBBOR-SQOUGZDYSA-N

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SYSTEMATIC NAME

OpenEye OEToolkits 2.0.7(2~{R},3~{S},4~{R},5~{R})-oxane-2,3,4,5-tetrol

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CONDENSED IUPAC CARBOHYDRATE SYMBOL

GMML 1.0DArapb

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COMMON NAME

GMML 1.0b-D-arabinopyranose

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IUPAC CARBOHYDRATE SYMBOL

PDB-CARE 1.0b-D-Arap

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SNFG CARBOHYDRATE SYMBOL

GMML 1.0Ara

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PDB entries

Showing all 1 items

PDB-7c3d:
Crystal structure of AofleA from Arthrobotrys oligospora in complex with D-arabinose

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