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Yorodumi- SASDGX9: Nucleolar RNA helicase 2 (DDX21) fragment 186-620 (Nucleolar RNA ... -
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-Basic information
Entry | Database: SASBDB / ID: SASDGX9 |
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Sample | Nucleolar RNA helicase 2 (DDX21) fragment 186-620
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Function / homology | Function and homology information RNA polymerase inhibitor activity / 7SK snRNA binding / R-loop processing / positive regulation of myeloid dendritic cell cytokine production / B-WICH complex / miRNA binding / positive regulation of transcription by RNA polymerase III / negative regulation of transcription by RNA polymerase I / snoRNA binding / positive regulation of transcription by RNA polymerase I ...RNA polymerase inhibitor activity / 7SK snRNA binding / R-loop processing / positive regulation of myeloid dendritic cell cytokine production / B-WICH complex / miRNA binding / positive regulation of transcription by RNA polymerase III / negative regulation of transcription by RNA polymerase I / snoRNA binding / positive regulation of transcription by RNA polymerase I / response to exogenous dsRNA / Major pathway of rRNA processing in the nucleolus and cytosol / B-WICH complex positively regulates rRNA expression / osteoblast differentiation / rRNA processing / chromosome / double-stranded RNA binding / positive regulation of canonical NF-kappaB signal transduction / defense response to virus / transcription by RNA polymerase II / RNA helicase activity / chromatin remodeling / rRNA binding / RNA helicase / innate immune response / mRNA binding / nucleolus / positive regulation of transcription by RNA polymerase II / ATP hydrolysis activity / mitochondrion / RNA binding / nucleoplasm / ATP binding / identical protein binding / membrane / cytosol Similarity search - Function |
Biological species | Homo sapiens (human) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDGX9 |
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-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2926 | Type: dummy / Software: (r10552) / Radius of dummy atoms: 2.50 A / Symmetry: P1 / Chi-square value: 1.071 / P-value: 0.317391 |
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-Sample
Sample | Name: Nucleolar RNA helicase 2 (DDX21) fragment 186-620 / Specimen concentration: 10 mg/ml |
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Buffer | Name: 20 mM HEPES, 500 mM NaCl, 10 % Glycerol, 2 mM TCEP / pH: 7.5 |
Entity #1349 | Name: DDX21-186-620 / Type: protein / Description: Nucleolar RNA helicase 2 fragment 186-620 / Formula weight: 49.034 / Num. of mol.: 2 / Source: Homo sapiens / References: UniProt: Q9NR30 Sequence: MGAFSNFPIS EETIKLLKGR GVTFLFPIQA KTFHHVYSGK DLIAQARTGT GKTFSFAIPL IEKLHGELQD RKRGRAPQVL VLAPTRELAN QVSKDFSDIT KKLSVACFYG GTPYGGQFER MRNGIDILVG TPGRIKDHIQ NGKLDLTKLK HVVLDEVDQM LDMGFADQVE ...Sequence: MGAFSNFPIS EETIKLLKGR GVTFLFPIQA KTFHHVYSGK DLIAQARTGT GKTFSFAIPL IEKLHGELQD RKRGRAPQVL VLAPTRELAN QVSKDFSDIT KKLSVACFYG GTPYGGQFER MRNGIDILVG TPGRIKDHIQ NGKLDLTKLK HVVLDEVDQM LDMGFADQVE EILSVAYKKD SEDNPQTLLF SATCPHWVFN VAKKYMKSTY EQVDLIGKKT QKTAITVEHL AIKCHWTQRA AVIGDVIRVY SGHQGRTIIF CETKKEAQEL SQNSAIKQDA QSLHGDIPQK QREITLKGFR NGSFGVLVAT NVAARGLDIP EVDLVIQSSP PKDVESYIHR SGRTGRAGRT GVCICFYQHK EEYQLVQVEQ KAGIKFKRIG VPSATEIIKA SSKDAIRLLD SVPPTAISHF KQSAEKLIEE KGAVEALAAA LAHISGHHHH HH |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.867 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: Nucleolar RNA helicase 2 (DDX21) fragment 186-620 / Measurement date: Mar 4, 2018 / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 3000 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 787 /
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Result | Type of curve: sec /
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