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Yorodumi- SASDGV9: Nucleolar RNA helicase 2 (DDX21) fragment 186-783 (Nucleolar RNA ... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDGV9 |
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Sample | Nucleolar RNA helicase 2 (DDX21) fragment 186-783
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Function / homology | Function and homology information RNA polymerase inhibitor activity / 7SK snRNA binding / R-loop processing / positive regulation of myeloid dendritic cell cytokine production / B-WICH complex / miRNA binding / positive regulation of transcription by RNA polymerase III / negative regulation of transcription by RNA polymerase I / snoRNA binding / positive regulation of transcription by RNA polymerase I ...RNA polymerase inhibitor activity / 7SK snRNA binding / R-loop processing / positive regulation of myeloid dendritic cell cytokine production / B-WICH complex / miRNA binding / positive regulation of transcription by RNA polymerase III / negative regulation of transcription by RNA polymerase I / snoRNA binding / positive regulation of transcription by RNA polymerase I / response to exogenous dsRNA / Major pathway of rRNA processing in the nucleolus and cytosol / B-WICH complex positively regulates rRNA expression / osteoblast differentiation / rRNA processing / chromosome / double-stranded RNA binding / positive regulation of canonical NF-kappaB signal transduction / defense response to virus / transcription by RNA polymerase II / RNA helicase activity / chromatin remodeling / rRNA binding / RNA helicase / innate immune response / mRNA binding / nucleolus / positive regulation of transcription by RNA polymerase II / ATP hydrolysis activity / mitochondrion / RNA binding / nucleoplasm / ATP binding / identical protein binding / membrane / cytosol Similarity search - Function |
Biological species | Homo sapiens (human) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDGV9 |
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-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2552 | Type: dummy / Software: (r9988) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.227 / P-value: 0.023503 |
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-Sample
Sample | Name: Nucleolar RNA helicase 2 (DDX21) fragment 186-783 / Specimen concentration: 10 mg/ml |
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Buffer | Name: 20 mM HEPES, 500 mM NaCl, 10 % Glycerol, 2 mM TCEP / pH: 7.5 |
Entity #1346 | Name: DDx21 fragment 186-7 / Type: protein / Description: Nucleolar RNA helicase 2 fragment 186-783 / Formula weight: 68.754 / Num. of mol.: 2 / Source: Homo sapiens / References: UniProt: Q9NR30 Sequence: MGSSHHHHHH SQDPENLYFQ GAFSNFPISE ETIKLLKGRG VTFLFPIQAK TFHHVYSGKD LIAQARTGTG KTFSFAIPLI EKLHGELQDR KRGRAPQVLV LAPTRELANQ VSKDFSDITK KLSVACFYGG TPYGGQFERM RNGIDILVGT PGRIKDHIQN GKLDLTKLKH ...Sequence: MGSSHHHHHH SQDPENLYFQ GAFSNFPISE ETIKLLKGRG VTFLFPIQAK TFHHVYSGKD LIAQARTGTG KTFSFAIPLI EKLHGELQDR KRGRAPQVLV LAPTRELANQ VSKDFSDITK KLSVACFYGG TPYGGQFERM RNGIDILVGT PGRIKDHIQN GKLDLTKLKH VVLDEVDQML DMGFADQVEE ILSVAYKKDS EDNPQTLLFS ATCPHWVFNV AKKYMKSTYE QVDLIGKKTQ KTAITVEHLA IKCHWTQRAA VIGDVIRVYS GHQGRTIIFC ETKKEAQELS QNSAIKQDAQ SLHGDIPQKQ REITLKGFRN GSFGVLVATN VAARGLDIPE VDLVIQSSPP KDVESYIHRS GRTGRAGRTG VCICFYQHKE EYQLVQVEQK AGIKFKRIGV PSATEIIKAS SKDAIRLLDS VPPTAISHFK QSAEKLIEEK GAVEALAAAL AHISGATSVD QRSLINSNVG FVTMILQCSI EMPNISYAWK ELKEQLGEEI DSKVKGMVFL KGKLGVCFDV PTASVTEIQE KWHDSRRWQL SVATEQPELE GPREGYGGFR GQREGSRGFR GQRDGNRRFR GQREGSRGPR GQRSGGGNKS NRSQNKGQKR SFSKAFGQ |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.867 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: Nucleolar RNA helicase 2 (DDX21) fragment 186-783 / Measurement date: Mar 4, 2018 / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 3000 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 792 /
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Result | Type of curve: sec /
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