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- SASDGC6: Glucuronoyl esterase, deglycolsylated full length (4-O-methyl-glu... -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDGC6
SampleGlucuronoyl esterase, deglycolsylated full length
  • 4-O-methyl-glucuronoyl methylesterase (Glucuronoyl esterase) (protein), CuGE, Cerrena unicolor
Function / homology
Function and homology information


(4-O-methyl)-D-glucuronate-lignin esterase / lignin catabolic process / carboxylic ester hydrolase activity / cellulose binding / carbohydrate metabolic process / extracellular region
Similarity search - Function
CBM1 (carbohydrate binding type-1) domain signature. / Cellulose-binding domain, fungal / Cellulose-binding domain superfamily / Fungal cellulose binding domain / CBM1 (carbohydrate binding type-1) domain profile. / Fungal-type cellulose-binding domain / Alpha/Beta hydrolase fold
Similarity search - Domain/homology
4-O-methyl-glucuronoyl methylesterase
Similarity search - Component
Biological speciesCerrena unicolor (fungus)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #3809
Type: dummy / Radius of dummy atoms: 2.25 A / Symmetry: P1 / Chi-square value: 1.109 / P-value: 0.774734
Model #3810
Type: dummy / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.17 / P-value: 0.002150

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Sample

SampleName: Glucuronoyl esterase, deglycolsylated full length / Specimen concentration: 3.7 mg/ml
BufferName: 20 mM sodium acetate / pH: 5
Entity #1913Name: CuGE / Type: protein
Description: 4-O-methyl-glucuronoyl methylesterase (Glucuronoyl esterase)
Formula weight: 50.907 / Num. of mol.: 1 / Source: Cerrena unicolor / References: UniProt: A0A0A7EQR3
Sequence: MQASAPQWGQ CGGIGWTGPT ACPSGWACQQ LNAYYSQCLQ GAAPAPARTT AAPPPPPATT AAPPPPTTSA PTGSSPVAGA CGAIASTVPN YNNAKLPDPF TFANGTALRT KADWSCRRAE ISALIQNYEA GTLPPKPPVV TASFSKSGNT GTLAITAGLS NSQTIKFSPT ...Sequence:
MQASAPQWGQ CGGIGWTGPT ACPSGWACQQ LNAYYSQCLQ GAAPAPARTT AAPPPPPATT AAPPPPTTSA PTGSSPVAGA CGAIASTVPN YNNAKLPDPF TFANGTALRT KADWSCRRAE ISALIQNYEA GTLPPKPPVV TASFSKSGNT GTLAITAGLS NSQTIKFSPT ISYPSGTPPA NGWPLIIAYE GGSIPIPAGV ATLTYSNSDM AQQNSASSRG QGLFYQLYGS THSASAMTAW VWGVSRIIDA LEMTPTAQIN TQRIGVTGCS RDGKGALMAG AFEERIALTI PQESGSGGDA CWRLSKYEID NGNQVQDAVE IVGENVWFST NFNNYVQKLP TVPEDHHLLA AMVAPRAMIS FENTDYLWLS PMSSFGCMTA AHTVWQGLGI ADSHGFAQVG GHAHCAWPSS LTPQLNAFIN RFLLDQSATT NVFTTNNQFG KVQWNAANWI TWTTPTLTGL EQKLISEEDL NSAVDHHHHH H

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Experimental information

BeamInstrument name: University of Copenhagen, Department of Drug Design and Pharmacology Xenocs BioXolver L with GeniX3D
City: Copenhagen / 国: Denmark / Type of source: X-ray in house / Wavelength: 0.154 Å / Dist. spec. to detc.: 0.571 mm
DetectorName: Pilatus3 R 300K / Type: pixel counting / Pixsize x: 172 mm
Scan
Title: Glucuronoyl esterase, deglycolsylated full length / Measurement date: Oct 10, 2018 / Storage temperature: 21 °C / Cell temperature: 21 °C / Exposure time: 60 sec. / Number of frames: 10 / Unit: 1/A /
MinMax
Q0.0197 0.4805
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 186 /
MinMax
Q0.0233507 0.250362
P(R) point1 186
R0 110
Result
Type of curve: single_conc /
ExperimentalPorod
MW45 kDa44 kDa
Volume-71 nm3

P(R)GuinierGuinier error
Forward scattering, I00.05964 0.062 0.00093
Radius of gyration, Rg3.19 nm3.19 nm0.29

MinMax
D-11
Guinier point2 18

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