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- SASDG42: Truncated sperm-associated antigen 1 (622-926), PIH1 domain-conta... -

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Basic information

Entry
Database: SASBDB / ID: SASDG42
SampleTruncated sperm-associated antigen 1 (622-926), PIH1 domain-containing protein 2 heterodimer complex (SPAG1(622-926)/PIH1D2)
  • PIH1 domain-containing protein 2 (protein), Homo sapiens
  • Sperm-associated antigen 1 (protein), Homo sapiens
Function / homology
Function and homology information


axonemal dynein complex assembly / R2TP complex / dynein axonemal particle / box C/D snoRNP assembly / protein folding chaperone complex / single fertilization / small GTPase binding / rRNA processing / hydrolase activity / protein stabilization ...axonemal dynein complex assembly / R2TP complex / dynein axonemal particle / box C/D snoRNP assembly / protein folding chaperone complex / single fertilization / small GTPase binding / rRNA processing / hydrolase activity / protein stabilization / cilium / ribonucleoprotein complex / GTP binding / nucleoplasm / cytoplasm / cytosol
Similarity search - Function
: / PIH1D1/2/3, CS-like domain / PIH1 CS-like domain / PIH1, N-terminal / : / PIH1 N-terminal domain / RNA-polymerase II-associated protein 3-like, C-terminal domain / Potential Monad-binding region of RPAP3 / Tetratricopeptide repeat / Tetratricopeptide repeat ...: / PIH1D1/2/3, CS-like domain / PIH1 CS-like domain / PIH1, N-terminal / : / PIH1 N-terminal domain / RNA-polymerase II-associated protein 3-like, C-terminal domain / Potential Monad-binding region of RPAP3 / Tetratricopeptide repeat / Tetratricopeptide repeat / TPR repeat region circular profile. / TPR repeat profile. / Tetratricopeptide repeats / Tetratricopeptide repeat / Tetratricopeptide-like helical domain superfamily
Similarity search - Domain/homology
Sperm-associated antigen 1 / PIH1 domain-containing protein 2
Similarity search - Component
Biological speciesHomo sapiens (human)
Contact author
  • Raphael Dos Santos Morais (University of Lorraine, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2940
Type: dummy / Radius of dummy atoms: 2.80 A / Chi-square value: 1.049 / P-value: 0.857460

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Sample

SampleName: Truncated sperm-associated antigen 1 (622-926), PIH1 domain-containing protein 2 heterodimer complex (SPAG1(622-926)/PIH1D2)
Specimen concentration: 6.6 mg/ml / Entity id: 1793 / 1794
BufferName: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP / pH: 7.5
Entity #1793Type: protein / Description: PIH1 domain-containing protein 2 / Formula weight: 36.248 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: Q8WWB5
Sequence: GPHMETSSKG LLTQVTQFWN LLDDLAQSDP EGYEKFIQQQ LKEGKQLCAA PEPQLCLQTR ILKPKEKILF INLCQWTRIP APQSTTHPVP LTVGKPEDTT EISDAYTVID VAYNPDVLHA AEKDQVKKNQ LIQMAMKCIE EKFQFTLSHS YHITKFRIKG SIQRMKQNLM ...Sequence:
GPHMETSSKG LLTQVTQFWN LLDDLAQSDP EGYEKFIQQQ LKEGKQLCAA PEPQLCLQTR ILKPKEKILF INLCQWTRIP APQSTTHPVP LTVGKPEDTT EISDAYTVID VAYNPDVLHA AEKDQVKKNQ LIQMAMKCIE EKFQFTLSHS YHITKFRIKG SIQRMKQNLM GIQTDSIDLR EKMRRELTLG QIRSSTMSNP DHFPQLLLPK DQVSGKAVCL IEEISSTEIQ VEMKMPAYEL KIVHDHSEKP LKIELKVELP GINSVSLCDL SVSEDDLLIE VSEKYRLHLN LPKLIDTEMT TAKFIKEKST LIITMPLV
Entity #1794Type: protein / Description: Sperm-associated antigen 1 / Formula weight: 34.907 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: Q07617
Sequence: MTFKALKEEG NQCVNDKNYK DALSKYSECL KINNKECAIY TNRALCYLKL CQFEEAKQDC DQALQLADGN VKAFYRRALA HKGLKNYQKS LIDLNKVILL DPSIIEAKME LEEVTRLLNL KDKTAPFNKE KERRKIEIQE VNEGKEEPGR PAGEVSMGCL ASEKGGKSSR ...Sequence:
MTFKALKEEG NQCVNDKNYK DALSKYSECL KINNKECAIY TNRALCYLKL CQFEEAKQDC DQALQLADGN VKAFYRRALA HKGLKNYQKS LIDLNKVILL DPSIIEAKME LEEVTRLLNL KDKTAPFNKE KERRKIEIQE VNEGKEEPGR PAGEVSMGCL ASEKGGKSSR SPEDPEKLPI AKPNNAYEFG QIINALSTRK DKEACAHLLA ITAPKDLPMF LSNKLEGDTF LLLIQSLKNN LIEKDPSLVY QHLLYLSKAE RFKMMLTLIS KGQKELIEQL FEDLSDTPNN HFTLEDIQAL KRQYEL

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Experimental information

BeamInstrument name: SOLEIL SWING / City: Saint-Aubin / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.1033 Å / Dist. spec. to detc.: 2 mm
DetectorName: Eiger 4M / Pixsize x: 75 mm
Scan
Title: Truncated sperm-associated antigen 1 (622-926), PIH1 domain-containing protein 2 heterodimer complex (SPAG1(622-926)/PIH1D2)
Measurement date: Mar 21, 2019 / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 25 / Unit: 1/A /
MinMax
Q0.0041 0.5786
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 491 /
MinMax
Q0.00820967 0.231569
P(R) point1 491
R0 193
Result
Type of curve: sec /
ExperimentalPorod
MW73.5 kDa-
Volume-123 nm3

P(R)GuinierGuinier error
Forward scattering, I00.04676 0.04622 7.0E-5
Radius of gyration, Rg5.22 nm4.98 nm0.01

MinMax
D-19.3
Guinier point10 47

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