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- SASDFY9: Sperm-associated antigen 1 (SPAG1) (Sperm-associated antigen 1, SPAG1) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDFY9
SampleSperm-associated antigen 1 (SPAG1)
  • Sperm-associated antigen 1 (protein), SPAG1, Homo sapiens
Function / homology
Function and homology information


axonemal dynein complex assembly / dynein axonemal particle / protein folding chaperone complex / single fertilization / hydrolase activity / protein stabilization / cilium / GTP binding / nucleoplasm / cytoplasm / cytosol
Similarity search - Function
: / RNA-polymerase II-associated protein 3-like, C-terminal domain / Potential Monad-binding region of RPAP3 / Tetratricopeptide repeat / Tetratricopeptide repeat / TPR repeat region circular profile. / TPR repeat profile. / Tetratricopeptide repeats / Tetratricopeptide repeat / Tetratricopeptide-like helical domain superfamily
Similarity search - Domain/homology
Sperm-associated antigen 1
Similarity search - Component
Biological speciesHomo sapiens (human)
Contact author
  • Raphael Dos Santos Morais (University of Lorraine, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2939
Type: dummy / Radius of dummy atoms: 4.20 A / Chi-square value: 1.247 / P-value: 0.808762

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Sample

SampleName: Sperm-associated antigen 1 (SPAG1) / Specimen concentration: 5 mg/ml
BufferName: 20 mM HEPES, 150 mM NaCl, 1% glycerol, 5 mM TCEP / pH: 7.5
Entity #1792Name: SPAG1 / Type: protein / Description: Sperm-associated antigen 1 / Formula weight: 103.929 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: Q07617
Sequence: GPHMTTKDYP SLWGFGTTKT FKIPIEHLDF KYIEKCSDVK HLEKILCVLR SGEEGYYPEL TEFCEKHLQA LAPESRALRK DKPAATAASF TAEEWEKIDG DIKSWVSEIK KEEDKMHFHE TETFPAMKDN LPPVRGSNSC LHVGKEKYSK RPTKKKTPRD YAEWDKFDVE ...Sequence:
GPHMTTKDYP SLWGFGTTKT FKIPIEHLDF KYIEKCSDVK HLEKILCVLR SGEEGYYPEL TEFCEKHLQA LAPESRALRK DKPAATAASF TAEEWEKIDG DIKSWVSEIK KEEDKMHFHE TETFPAMKDN LPPVRGSNSC LHVGKEKYSK RPTKKKTPRD YAEWDKFDVE KECLKIDEDY KEKTVIDKSH LSKIETRIDT AGLTEKEKDF LATREKEKGN EAFNSGDYEE AVMYYTRSIS ALPTVVAYNN RAQAEIKLQN WNSAFQDCEK VLELEPGNVK ALLRRATTYK HQNKLREATE DLSKVLDVEP DNDLAKKTLS EVERDLKNSE AASETQTKGK RMVIQEIENS EDEEGKSGRK HEDGGGDKKP AEPAGAARAA QPCVMGNIQK KLTGKAEGGK RPARGAPQRG QTPEAGADKR SPRRASAAAA AGGGATGHPG GGQGAENPAG LKSQGNELFR SGQFAEAAGK YSAAIALLEP AGSEIADDLS ILYSNRAACY LKEGNCSGCI QDCNRALELH PFSMKPLLRR AMAYETLEQY GKAYVDYKTV LQIDCGLQLA NDSVNRLSRI LMELDGPNWR EKLSPIPAVP ASVPLQAWHP AKEMISKQAG DSSSHRQQGI TDEKTFKALK EEGNQCVNDK NYKDALSKYS ECLKINNKEC AIYTNRALCY LKLCQFEEAK QDCDQALQLA DGNVKAFYRR ALAHKGLKNY QKSLIDLNKV ILLDPSIIEA KMELEEVTRL LNLKDKTAPF NKEKERRKIE IQEVNEGKEE PGRPAGEVSM GCLASEKGGK SSRSPEDPEK LPIAKPNNAY EFGQIINALS TRKDKEACAH LLAITAPKDL PMFLSNKLEG DTFLLLIQSL KNNLIEKDPS LVYQHLLYLS KAERFKMMLT LISKGQKELI EQLFEDLSDT PNNHFTLEDI QALKRQYEL

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Experimental information

BeamInstrument name: SOLEIL SWING / City: Saint-Aubin / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.1033 Å / Dist. spec. to detc.: 2 mm
DetectorName: Eiger 4M / Pixsize x: 75 mm
Scan
Title: Sperm-associated antigen 1 (SPAG1) / Measurement date: Mar 21, 2019 / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 16 / Unit: 1/A /
MinMax
Q0.0041 0.5786
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 417 /
MinMax
Q0.00547312 0.195133
P(R) point1 417
R0 340
Result
Type of curve: sec /
ExperimentalPorod
MW151 kDa-
Volume-374 nm3

P(R)GuinierGuinier error
Forward scattering, I00.02634 0.02603 -
Radius of gyration, Rg7.72 nm7.288 nm0.08

MinMax
D-34
Guinier point4 22

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