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- SASDFF5: Protein DPCD -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDFF5
SampleProtein DPCD
  • Protein DPCD (protein), Homo sapiens
Function / homology
Function and homology information


third ventricle development / left/right pattern formation / epithelial cilium movement involved in extracellular fluid movement / lateral ventricle development / flagellated sperm motility / determination of left/right symmetry / establishment of localization in cell / spermatogenesis / extracellular region / nucleus
Similarity search - Function
Protein DPCD / DPCD protein family
Similarity search - Domain/homology
Biological speciesHomo sapiens (human)
Contact author
  • Raphael Dos Santos Morais (University of Lorraine)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2933
Type: dummy / Radius of dummy atoms: 1.30 A / Chi-square value: 1.136 / P-value: 0.537364

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Sample

SampleName: Protein DPCD / Specimen concentration: 12 mg/ml
BufferName: HEPES 20 mM, NaCl 150 mM, Glycerol 1%, TCEP 5 mM / pH: 7.5
Entity #1607Type: protein / Description: Protein DPCD / Formula weight: 23.505 / Num. of mol.: 1 / Source: Homo sapiens / References: UniProt: Q9BVM2
Sequence: GPHMAVTGWL ESLRTAQKTA LLQDGRRKVH YLFPDGKEMA EEYDEKTSEL LVRKWRVKSA LGAMGQWQLE VGDPAPLGAG NLGPELIKES NANPIFMRKD TKMSFQWRIR NLPYPKDVYS VSVDQKERCI IVRTTNKKYY KKFSIPDLDR HQLPLDDASL SFAHANCTLI ...Sequence:
GPHMAVTGWL ESLRTAQKTA LLQDGRRKVH YLFPDGKEMA EEYDEKTSEL LVRKWRVKSA LGAMGQWQLE VGDPAPLGAG NLGPELIKES NANPIFMRKD TKMSFQWRIR NLPYPKDVYS VSVDQKERCI IVRTTNKKYY KKFSIPDLDR HQLPLDDASL SFAHANCTLI ISYQKPKEVV VAESELQKEL KKVKTAHSND GDCKTQ

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Experimental information

BeamInstrument name: SOLEIL SWING / City: Saint-Aubin / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.1033 Å / Dist. spec. to detc.: 2 mm
DetectorName: Eiger 4M / Pixsize x: 75 mm
Scan
Title: Protein DPCD / Measurement date: Mar 21, 2019 / Cell temperature: 15 °C / Exposure time: 1 sec. / Number of frames: 33 / Unit: 1/A /
MinMax
Q0.0041 0.5786
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 790 /
MinMax
Q0.00866576 0.368017
P(R) point1 790
R0 123
Result
Type of curve: sec
Comments: The experimental molecular weight was determined from the volume of correlation, Vc.
ExperimentalPorod
MW23 kDa24 kDa
Volume-39 nm3

P(R)Guinier
Forward scattering, I00.02246 0.022
Radius of gyration, Rg2.36 nm2.21 nm

MinMax
D-12.3
Guinier point10 100

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