[English] 日本語
Yorodumi- SASDEZ9: Collagen VI von Willebrand factor (VWA) four-domain fragment, N6N3 -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDEZ9 |
---|---|
Sample | Collagen VI von Willebrand factor (VWA) four-domain fragment, N6N3
|
Function / homology | Function and homology information collagen trimer / extracellular matrix / sarcolemma / collagen-containing extracellular matrix / extracellular space Similarity search - Function |
Biological species | Mus musculus (house mouse) |
Contact author |
|
-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
---|
-Downloads & links
-Data source
SASBDB page | SASDEZ9 |
---|
-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
---|
-External links
Related items in Molecule of the Month |
---|
-Models
Model #2799 | Type: mix / Software: (5) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.020 / P-value: 0.553966 |
---|---|
Model #2800 | Type: mix / Software: (8) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.046 / P-value: 0.093444 |
Model #2801 | Type: dummy / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 0.98 / P-value: 0.863635 |
-Sample
Sample | Name: Collagen VI von Willebrand factor (VWA) four-domain fragment, N6N3 Specimen concentration: 7 mg/ml |
---|---|
Buffer | Name: 20 mM TRIS, 150mM NaCl 3% v/v glycerol / pH: 7.4 Comment: The TRIS buffer is pH first, then add additional components are added without further pH adjustment |
Entity #1459 | Name: N6N3 / Type: protein / Description: Collagen, type VI, alpha 3 / Formula weight: 92.936 / Num. of mol.: 1 / Source: Mus musculus / References: UniProt: D3YWD1 Sequence: MAHHHHHHSS GSWSHPQFEK GGGSGGGSGG GSWSHPQFEK SSGLEVLFQG PESKRDILFL FDGSVNVLGQ FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR ...Sequence: MAHHHHHHSS GSWSHPQFEK GGGSGGGSGG GSWSHPQFEK SSGLEVLFQG PESKRDILFL FDGSVNVLGQ FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR SSDAVAGPAS SLKQRGVVPF IFQAKNANPS ELEQIVLSPA FILAAESLPK IGDLQSQIVS LLKAEQGSGP VSGEKDVVFL IDGSEGVRSG FPLLKDFVQR VVESLDVGPD RVRVALVQYS DRTRPEFYLN SHMDQQGVIS AIRRLTLLGG PTPNTGAALE FVLRNILTSS TGSRIAEGVP QLLIVLTAEP SGDDVRGPSV VLKQGGAVPI GIGIGNADIS EMQTISFIPD FAVAIPTFRE LGTIQQVISE RVIQLNREEL SSLKPILTPS TGAGVGSKKD VVFLIDGSRN AGPEFQYIRT LIERIVEYLD IGFDTTRVAV IQFSEDSKME FPLNAHFSKD EVQNAVRRLR PKGGSQVYIG NALEYVLKNI FQRPLGSRIE EGVPQFLVLI SSGKSDDEVD DSAVELKQFG VAPLTIARHT DQEELVKISL SPEYVYSVST FRELPRLEQK LLTPITTLTS QQIHQILAST RYPPSVVESD AADIVFLIDS SDAVKPDGIA HIRDFVSRIV RRLNIGPSKV RIGVVQFSND VFPEFYLKTH KSQSSVLEAI RRLRFKGGSP LNTGRALEFV ARNLFVKSAG SRIEDGVPQH LVLFLGGKSQ DDVARHAQVI SSSGIVSLGI GDRNIDRTDL QTITNDPRLV FTVREFRELP NIEERVMLSF GPSGATPQPP GVDLPSPSRP |
-Experimental information
Beam | Instrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3 mm | ||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Detector | Name: Pilatus 6M | ||||||||||||||||||||||||||||||
Scan | Title: Collagen VI von Willebrand factor (VWA) four-domain fragment, N6N3 Measurement date: Nov 4, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 50 / Unit: 1/nm /
| ||||||||||||||||||||||||||||||
Distance distribution function P(R) | Sofotware P(R): GNOM 4.6 / Number of points: 502 /
| ||||||||||||||||||||||||||||||
Result | Type of curve: sec /
|