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- SASDEZ9: Collagen VI von Willebrand factor (VWA) four-domain fragment, N6N3 -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDEZ9
SampleCollagen VI von Willebrand factor (VWA) four-domain fragment, N6N3
  • Collagen, type VI, alpha 3 (protein), N6N3, Mus musculus
Function / homology
Function and homology information


collagen trimer / response to UV / extracellular matrix / phosphatidylinositol 3-kinase/protein kinase B signal transduction / serine-type endopeptidase inhibitor activity / sarcolemma / neuron apoptotic process / cell adhesion / extracellular space
Similarity search - Function
Collagen alpha-3(VI) chain, vWA domain / : / von Willebrand factor type A domain / VWFA domain profile. / von Willebrand factor (vWF) type A domain / von Willebrand factor, type A / von Willebrand factor A-like domain superfamily
Similarity search - Domain/homology
Collagen alpha-3(VI) chain
Similarity search - Component
Biological speciesMus musculus (house mouse)
Contact author
  • Davide Comoletti (Department of Neuroscience and Cell Biology, Rutgers University., New Brunswick, NJ, United States)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2799
Type: mix / Software: (5) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.020 / P-value: 0.553966
Model #2800
Type: mix / Software: (8) / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 1.046 / P-value: 0.093444
Model #2801
Type: dummy / Radius of dummy atoms: 1.90 A / Symmetry: P1 / Chi-square value: 0.98 / P-value: 0.863635

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Sample

SampleName: Collagen VI von Willebrand factor (VWA) four-domain fragment, N6N3
Specimen concentration: 7 mg/ml
BufferName: 20 mM TRIS, 150mM NaCl 3% v/v glycerol / pH: 7.4
Comment: The TRIS buffer is pH first, then add additional components are added without further pH adjustment
Entity #1459Name: N6N3 / Type: protein / Description: Collagen, type VI, alpha 3 / Formula weight: 92.936 / Num. of mol.: 1 / Source: Mus musculus / References: UniProt: D3YWD1
Sequence: MAHHHHHHSS GSWSHPQFEK GGGSGGGSGG GSWSHPQFEK SSGLEVLFQG PESKRDILFL FDGSVNVLGQ FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR ...Sequence:
MAHHHHHHSS GSWSHPQFEK GGGSGGGSGG GSWSHPQFEK SSGLEVLFQG PESKRDILFL FDGSVNVLGQ FPAVRDFLYR IIEELDVKPD GTRVAIAQFS DDVRLESRFS EHQTKAEILN LVKKMKLKTG KALNLGYALD YALRNIFVRS AGSRIEDNVQ QFLVLLVAGR SSDAVAGPAS SLKQRGVVPF IFQAKNANPS ELEQIVLSPA FILAAESLPK IGDLQSQIVS LLKAEQGSGP VSGEKDVVFL IDGSEGVRSG FPLLKDFVQR VVESLDVGPD RVRVALVQYS DRTRPEFYLN SHMDQQGVIS AIRRLTLLGG PTPNTGAALE FVLRNILTSS TGSRIAEGVP QLLIVLTAEP SGDDVRGPSV VLKQGGAVPI GIGIGNADIS EMQTISFIPD FAVAIPTFRE LGTIQQVISE RVIQLNREEL SSLKPILTPS TGAGVGSKKD VVFLIDGSRN AGPEFQYIRT LIERIVEYLD IGFDTTRVAV IQFSEDSKME FPLNAHFSKD EVQNAVRRLR PKGGSQVYIG NALEYVLKNI FQRPLGSRIE EGVPQFLVLI SSGKSDDEVD DSAVELKQFG VAPLTIARHT DQEELVKISL SPEYVYSVST FRELPRLEQK LLTPITTLTS QQIHQILAST RYPPSVVESD AADIVFLIDS SDAVKPDGIA HIRDFVSRIV RRLNIGPSKV RIGVVQFSND VFPEFYLKTH KSQSSVLEAI RRLRFKGGSP LNTGRALEFV ARNLFVKSAG SRIEDGVPQH LVLFLGGKSQ DDVARHAQVI SSSGIVSLGI GDRNIDRTDL QTITNDPRLV FTVREFRELP NIEERVMLSF GPSGATPQPP GVDLPSPSRP

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Experimental information

BeamInstrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3 mm
DetectorName: Pilatus 6M
Scan
Title: Collagen VI von Willebrand factor (VWA) four-domain fragment, N6N3
Measurement date: Nov 4, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 50 / Unit: 1/nm /
MinMax
Q0.0612 7.003
Distance distribution function P(R)
Sofotware P(R): GNOM 4.6 / Number of points: 502 /
MinMax
Q0.0639 4.198
P(R) point1 502
R0 15.6
Result
Type of curve: sec /
ExperimentalPorod
MW89 kDa89 kDa
Volume-143 nm3

P(R)GuinierGuinier error
Forward scattering, I0517.8 514.54 1.1
Radius of gyration, Rg4.24 nm4.12 nm0.01

MinMax
D-15.6
Guinier point1 93

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