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Yorodumi- SASDEY9: Collagen VI von Willebrand factor (VWA) double-domain fragment, N5N4 -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDEY9 |
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Sample | Collagen VI von Willebrand factor (VWA) double-domain fragment, N5N4
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Function / homology | Function and homology information collagen trimer / extracellular matrix / sarcolemma / collagen-containing extracellular matrix / extracellular space Similarity search - Function |
Biological species | Mus musculus (house mouse) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDEY9 |
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-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2795 | Type: dummy / Software: (DAMMIN) / Radius of dummy atoms: 2.50 A / Symmetry: P1 Comment: Refined individual model calculated from 10 spatially aligned models Chi-square value: 1.027 / P-value: 0.852619 |
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Model #2796 | Type: dummy / Software: (5.0) / Radius of dummy atoms: 2.50 A / Symmetry: P1 Comment: Averaged spatial repersentation calculated from 10 aligned individual models Chi-square value: 1.027 / P-value: 0.852619 |
Model #2797 | Type: dummy / Radius of dummy atoms: 1.90 A / Chi-square value: 1.02 / P-value: 0.798665 |
Model #2798 | Type: mix / Radius of dummy atoms: 1.90 A / Symmetry: P1 Comment: Generated using the crystal structure of N5 in combination with an ITASSER homology model of N4 Chi-square value: 1.018 / P-value: 0.180377 |
-Sample
Sample | Name: Collagen VI von Willebrand factor (VWA) double-domain fragment, N5N4 Specimen concentration: 12 mg/ml |
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Buffer | Name: 20 mM TRIS, 150mM NaCl 3% v/v glycerol / pH: 7.4 Comment: The TRIS buffer is pH first, then add additional components are added without further pH adjustment |
Entity #1458 | Name: N5N4 / Type: protein / Description: Collagen, type VI, alpha 3 / Formula weight: 44.274 / Num. of mol.: 1 / Source: Mus musculus / References: UniProt: D3YWD1 Sequence: GEKDVVFLID GSEGVRSGFP LLKDFVQRVV ESLDVGPDRV RVALVQYSDR TRPEFYLNSH MDQQGVISAI RRLTLLGGPT PNTGAALEFV LRNILTSSTG SRIAEGVPQL LIVLTAEPSG DDVRGPSVVL KQGGAVPIGI GIGNADISEM QTISFIPDFA VAIPTFRELG ...Sequence: GEKDVVFLID GSEGVRSGFP LLKDFVQRVV ESLDVGPDRV RVALVQYSDR TRPEFYLNSH MDQQGVISAI RRLTLLGGPT PNTGAALEFV LRNILTSSTG SRIAEGVPQL LIVLTAEPSG DDVRGPSVVL KQGGAVPIGI GIGNADISEM QTISFIPDFA VAIPTFRELG TIQQVISERV IQLNREELSS LKPILTPSTG AGVGSKKDVV FLIDGSRNAG PEFQYIRTLI ERIVEYLDIG FDTTRVAVIQ FSEDSKMEFP LNAHFSKDEV QNAVRRLRPK GGSQVYIGNA LEYVLKNIFQ RPLGSRIEEG VPQFLVLISS GKSDDEVDDS AVELKQFGVA PLTIARHTDQ EELVKISLSP EYVYSVSTFR ELPRLEQKLL TPITTLTSQQ IHQILASTRY PPS |
-Experimental information
Beam | Instrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 6M | ||||||||||||||||||||||||||||||
Scan | Title: Collagen VI von Willebrand factor (VWA) double-domain fragment, N5N4 Measurement date: Apr 20, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 18 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 1635 /
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Result | Type of curve: sec /
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