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- SASDEX9: Hydroxypyruvate aldolase (HpcH/HpaI aldolase) (HpcH/HpaI aldolase) -

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Basic information

Entry
Database: SASBDB / ID: SASDEX9
SampleHydroxypyruvate aldolase (HpcH/HpaI aldolase)
  • HpcH/HpaI aldolase (protein), Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Function / homologyHpcH/HpaI aldolase/citrate lyase domain / HpcH/HpaI aldolase/citrate lyase / Pyruvate kinase-like domain superfamily / Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily / catalytic activity / HpcH/HpaI aldolase
Function and homology information
Biological speciesSphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) (bacteria)
Contact author
  • Cy M Jeffries (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #2793
Type: dummy / Radius of dummy atoms: 1.90 A / Symmetry: P32 / Chi-square value: 1.07 / P-value: 0.158445

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Sample

SampleName: Hydroxypyruvate aldolase (HpcH/HpaI aldolase) / Specimen concentration: 8 mg/ml
BufferName: 20 mM HEPES, / pH: 7.5
Entity #1457Type: protein / Description: HpcH/HpaI aldolase / Formula weight: 27.435 / Num. of mol.: 6
Source: Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
References: UniProt: A5VH82
Sequence: MHHHHHHNKV RTCWNEGRPA LAGWLQLPGT LHAEALARLD YDAVVIDMQH SPIDFGQVAP MLIAIELGGA EPFVRTQVND PSDIMKLLDA GAYGIIAPMV NTRAEAQTLA SALHYSPRGL RSFGPRRPSL RYGSGYLAQA SETVVGLAMI ETREALANID EILSVDGIDG ...Sequence:
MHHHHHHNKV RTCWNEGRPA LAGWLQLPGT LHAEALARLD YDAVVIDMQH SPIDFGQVAP MLIAIELGGA EPFVRTQVND PSDIMKLLDA GAYGIIAPMV NTRAEAQTLA SALHYSPRGL RSFGPRRPSL RYGSGYLAQA SETVVGLAMI ETREALANID EILSVDGIDG VFIGPTDLAL DLGHAPLVDT EEAEVVSAIA HVRERAHAAG KRVGIFCGSG GFARVKLAEG FDFVTAAPDL AMLSAAARQV IADARAL

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Experimental information

BeamInstrument name: PETRA III EMBL P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 3 mm
DetectorName: Pilatus 6M
Scan
Title: Hydroxypyruvate aldolase (HpcH/HpaI aldolase) / Measurement date: Nov 23, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 51 / Unit: 1/nm /
MinMax
Q0.0914 7.2535
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 1423 /
MinMax
Q0.0914278 4.00551
P(R) point1 1423
R0 9.35
Result
Type of curve: sec
Comments: The quoted experimental MW is that determined from MALLS.
ExperimentalPorod
MW157 kDa146 kDa
Volume-233 nm3

P(R)GuinierGuinier error
Forward scattering, I01324 1320.69 2
Radius of gyration, Rg3.325 nm3.34 nm0.01

MinMax
D-9.35
Guinier point19 110

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