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- SASDEW7: C-terminal truncated bank vole prion protein (amino acids 90-231) -

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ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDEW7
SampleC-terminal truncated bank vole prion protein (amino acids 90-231)
  • Major prion protein (protein), Myodes glareolus
Function / homology
Function and homology information


side of membrane / protein homooligomerization / Golgi apparatus / metal ion binding / plasma membrane
Similarity search - Function
Major prion protein N-terminal domain / Major prion protein bPrPp - N terminal / Prion protein signature 1. / Prion protein signature 2. / Prion protein / Major prion protein / Prion/Doppel protein, beta-ribbon domain / Prion/Doppel beta-ribbon domain superfamily / Prion/Doppel alpha-helical domain
Similarity search - Domain/homology
Biological speciesMyodes glareolus (Bank vole)
Contact author
  • Gabriele Giachin (ESRF, European Synchrotron Radiation Facility, Grenoble, France)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

Downloads & links

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Models

Model #2625
Type: mix / Symmetry: P1 / Chi-square value: 3.461 / P-value: 0.058682
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: C-terminal truncated bank vole prion protein (amino acids 90-231)
Specimen concentration: 10 mg/ml
BufferName: 25 mM Ammonium Acetate, 250 mM NaCl / pH: 5.5
Entity #1370Type: protein / Description: Major prion protein / Formula weight: 16.14 / Num. of mol.: 1 / Source: Myodes glareolus / References: UniProt: Q8VHV5
Sequence:
GQGGGTHNQW NKPSKPKTNM KHVAGAAAAG AVVGGLGGYM LGSAMSRPMI HFGNDWEDRY YRENMNRYPN QVYYRPVDQY NNQNNFVHDC VNITIKQHTV TTTTKGENFT ETDVKMMERV VEQMCVTQYQ KESQAYYEGR SS

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.864 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: C-terminal truncated bank vole prion protein (amino acids 90-231)
Measurement date: Feb 25, 2018 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 1 sec. / Number of frames: 1 / Unit: 1/nm /
MinMax
Q0.103 4.9277
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 710 /
MinMax
Q0.182749 3.51032
P(R) point1 710
R0 9.4
Result
Type of curve: sec
ExperimentalStandardPorod
MW16.1 kDa16.3 kDa14.3 kDa
Volume--28.54 nm3

P(R)GuinierGuinier error
Forward scattering, I025.62 25.07 0.05
Radius of gyration, Rg2.417 nm2.25 nm0.01

MinMax
D-9.4
Guinier point35 70

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