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Yorodumi- SASDEW3: DNA ligase A (MtbLigA) complexed with exodeoxyribonuclease III pr... -
+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDEW3 |
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Sample | DNA ligase A (MtbLigA) complexed with exodeoxyribonuclease III protein (MtbXthA)
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Function / homology | Function and homology information : / base-excision repair, DNA ligation / DNA ligase (NAD+) / DNA ligase (NAD+) activity / exodeoxyribonuclease III / DNA ligation / peptidoglycan-based cell wall / endonuclease activity / DNA replication / DNA repair ...: / base-excision repair, DNA ligation / DNA ligase (NAD+) / DNA ligase (NAD+) activity / exodeoxyribonuclease III / DNA ligation / peptidoglycan-based cell wall / endonuclease activity / DNA replication / DNA repair / magnesium ion binding / DNA binding / plasma membrane / cytosol Similarity search - Function |
Biological species | Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (bacteria) Mycobacterium tuberculosis (bacteria) |
Contact author |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Data source
SASBDB page | SASDEW3 |
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-Related structure data
Similar structure data | Similarity search - Function & homologyF&H Search |
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-External links
Related items in Molecule of the Month |
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-Models
Model #2353 | Type: dummy / Software: (dammif) / Radius of dummy atoms: 8.60 A / Symmetry: P1 / Chi-square value: 1.498 |
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Model #2354 | Type: dummy / Software: (DAMFILT) / Radius of dummy atoms: 6.75 A / Symmetry: P1 / Chi-square value: 1.498 |
-Sample
Sample | Name: DNA ligase A (MtbLigA) complexed with exodeoxyribonuclease III protein (MtbXthA) Specimen concentration: 2.5 mg/ml / Entity id: 1276 / 1277 |
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Buffer | Name: 50 mM Tris-HCl 200 mM NaCl 2mM β-mercaptoethanol (BME) pH: 8 |
Entity #1276 | Name: MtbLigA / Type: protein / Description: DNA ligase A / Formula weight: 76.079 / Num. of mol.: 1 Source: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) References: UniProt: P9WNV1 Sequence: VSSPDADQTA PEVLRQWQAL AEEVREHQFR YYVRDAPIIS DAEFDELLRR LEALEEQHPE LRTPDSPTQL VGGAGFATDF EPVDHLERML SLDNAFTADE LAAWAGRIHA EVGDAAHYLC ELKIDGVALS LVYREGRLTR ASTRGDGRTG EDVTLNARTI ADVPERLTPG ...Sequence: VSSPDADQTA PEVLRQWQAL AEEVREHQFR YYVRDAPIIS DAEFDELLRR LEALEEQHPE LRTPDSPTQL VGGAGFATDF EPVDHLERML SLDNAFTADE LAAWAGRIHA EVGDAAHYLC ELKIDGVALS LVYREGRLTR ASTRGDGRTG EDVTLNARTI ADVPERLTPG DDYPVPEVLE VRGEVFFRLD DFQALNASLV EEGKAPFANP RNSAAGSLRQ KDPAVTARRR LRMICHGLGH VEGFRPATLH QAYLALRAWG LPVSEHTTLA TDLAGVRERI DYWGEHRHEV DHEIDGVVVK VDEVALQRRL GSTSRAPRWA IAYKYPPEEA QTKLLDIRVN VGRTGRITPF AFMTPVKVAG STVGQATLHN ASEIKRKGVL IGDTVVIRKA GDVIPEVLGP VVELRDGSER EFIMPTTCPE CGSPLAPEKE GDADIRCPNA RGCPGQLRER VFHVASRNGL DIEVLGYEAG VALLQAKVIA DEGELFALTE RDLLRTDLFR TKAGELSANG KRLLVNLDKA KAAPLWRVLV ALSIRHVGPT AARALATEFG SLDAIAAAST DQLAAVEGVG PTIAAAVTEW FAVDWHREIV DKWRAAGVRM VDERDESVPR TLAGLTIVVT GSLTGFSRDD AKEAIVARGG KAAGSVSKKT NYVVAGDSPG SKYDKAVELG VPILDEDGFR RLLADGPASR THHHHHH |
Entity #1277 | Name: MtbXthA / Type: protein / Description: Probable exodeoxyribonuclease III protein XthA / Formula weight: 32.931 / Num. of mol.: 1 / Source: Mycobacterium tuberculosis / References: UniProt: A0A0T9L251 Sequence: MPDGTIDGGH PQRPASPRLR SPLLRLATWN VNSIRTRLDR VLDWLGRADV DVLAMQETKC PDGQFPALPL FELGYDVAHV GFDQWNGVAI ASRVGLDDVR VGFDGQPSWS GKPEVAATTE ARALGATCGG IRVWSLYVPN GRALDDPHYT YKLDWLAALR DTAEGWLRDD ...Sequence: MPDGTIDGGH PQRPASPRLR SPLLRLATWN VNSIRTRLDR VLDWLGRADV DVLAMQETKC PDGQFPALPL FELGYDVAHV GFDQWNGVAI ASRVGLDDVR VGFDGQPSWS GKPEVAATTE ARALGATCGG IRVWSLYVPN GRALDDPHYT YKLDWLAALR DTAEGWLRDD PAAPIALMGD WNIAPTDDDV WSTEFFAGCT HVSEPERKAF NAIVDAQFTD VVRPFTPGPG VYTYWDYTQL RFPKKQGMRI DFILGSPALA ARVMDAQIVR EERKGKAPSD HAPVLVDLHA GHHHHHH |
-Experimental information
Beam | Instrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotronSynchrotron / Wavelength: 0.081 Å / Dist. spec. to detc.: 1.1 mm | ||||||||||||||||||||||||||||||
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Detector | Name: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm | ||||||||||||||||||||||||||||||
Scan | Title: DNA ligase A (MtbLigA) complexed with exodeoxyribonuclease III protein MtbXthA Measurement date: May 13, 2017 / Storage temperature: 4 °C / Cell temperature: 10 °C / Exposure time: 1 sec. / Number of frames: 10 / Unit: 1/nm /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 537 /
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Result | Type of curve: single_conc /
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