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- SASDEM7: Human glycine decarboxylase with glycine (Glycine decarboxylase, GLDC) -

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Open data


ID or keywords:

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Basic information

Entry
Database: SASBDB / ID: SASDEM7
SampleHuman glycine decarboxylase with glycine
  • Glycine decarboxylase (protein), GLDC, Homo sapiens
Function / homology
Function and homology information


response to methylamine / response to lipoic acid / glycine dehydrogenase (aminomethyl-transferring) / pyridoxal binding / glycine dehydrogenase (decarboxylating) activity / glycine catabolic process / Glycine degradation / glycine cleavage complex / glycine decarboxylation via glycine cleavage system / glycine binding ...response to methylamine / response to lipoic acid / glycine dehydrogenase (aminomethyl-transferring) / pyridoxal binding / glycine dehydrogenase (decarboxylating) activity / glycine catabolic process / Glycine degradation / glycine cleavage complex / glycine decarboxylation via glycine cleavage system / glycine binding / cellular response to leukemia inhibitory factor / pyridoxal phosphate binding / electron transfer activity / lyase activity / mitochondrial matrix / protein homodimerization activity / mitochondrion / nucleoplasm / plasma membrane / cytosol
Similarity search - Function
Glycine dehydrogenase (decarboxylating) / Glycine cleavage system P protein / : / : / Glycine cleavage system P-protein / Glycine dehydrogenase, C-terminal domain / Aromatic amino acid beta-eliminating lyase/threonine aldolase / Beta-eliminating lyase / Pyridoxal phosphate-dependent transferase, small domain / Pyridoxal phosphate-dependent transferase, major domain / Pyridoxal phosphate-dependent transferase
Similarity search - Domain/homology
Glycine dehydrogenase (decarboxylating), mitochondrial
Similarity search - Component
Biological speciesHomo sapiens (human)
Contact author
  • Bart Van Laer (ESRF, European Synchrotron Radiation Facility, Grenoble, France)

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Structure visualization

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Models

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Sample

SampleName: Human glycine decarboxylase with glycine / Specimen concentration: 5 mg/ml
BufferName: 10 mM TRIS pH 7.5, 100 mM NaCl, 1 mM DTT , 100 mM glycine
pH: 7.5
Entity #1368Name: GLDC / Type: protein / Description: Glycine decarboxylase / Formula weight: 109.367 / Num. of mol.: 2 / Source: Homo sapiens / References: UniProt: P23378
Sequence: MAAAGASRLL ERLLPRHDDF ARRHIGPGDK DQREMLQTLG LASIDELIEK TVPANIRLKR PLKMEDPVCE NEILATLHAI SSKNQIWRSY IGMGYYNCSV PQTILRNLLE NSGWITQYTP YQPEVSQGRL ESLLNYQTMV CDITGLDMAN ASLLDEGTAA AEALQLCYRH ...Sequence:
MAAAGASRLL ERLLPRHDDF ARRHIGPGDK DQREMLQTLG LASIDELIEK TVPANIRLKR PLKMEDPVCE NEILATLHAI SSKNQIWRSY IGMGYYNCSV PQTILRNLLE NSGWITQYTP YQPEVSQGRL ESLLNYQTMV CDITGLDMAN ASLLDEGTAA AEALQLCYRH NKRRKFLVDP RCHPQTIAVV QTRAKYTGVL TELKLPCEMD FSGKDVSGVL FQYPDTEGKV EDFTELVERA HQSGSLACCA TDLLALCILR PPGEFGVDIA LGSSQRFGVP LGYGGPHAAF FAVRESLVRM MPGRMVGVTR DATGKEVYRL ALQTREQHIR RDKATSNICT AQALLANMAA MFAIYHGSHG LEHIARRVHN ATLILSEGLK RAGHQLQHDL FFDTLKIQCG CSVKEVLGRA AQRQINFRLF EDGTLGISLD ETVNEKDLDD LLWIFGCESS AELVAESMGE ECRGIPGSVF KRTSPFLTHQ VFNSYHSETN IVRYMKKLEN KDISLVHSMI PLGSCTMKLN SSSELAPITW KEFANIHPFV PLDQAQGYQQ LFRELEKDLC ELTGYDQVCF QPNSGAQGEY AGLATIRAYL NQKGEGHRTV CLIPKSAHGT NPASAHMAGM KIQPVEVDKY GNIDAVHLKA MVDKHKENLA AIMITYPSTN GVFEENISDV CDLIHQHGGQ VYLDGANMNA QVGICRPGDF GSDVSHLNLH KTFCIPHGGG GPGMGPIGVK KHLAPFLPNH PVISLKRNED ACPVGTVSAA PWGSSSILPI SWAYIKMMGG KGLKQATETA ILNANYMAKR LETHYRILFR GARGYVGHEF ILDTRPFKKS ANIEAVDVAK RLQDYGFHAP TMSWPVAGTL MVEPTESEDK AELDRFCDAM ISIRQEIADI EEGRIDPRVN PLKMSPHSLT CVTSSHWDRP YSREVAAFPL PFVKPENKFW PTIARIDDIY GDQHLVCTCP PMEVYESPFS EQKRASSGHH HHHH

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Experimental information

BeamInstrument name: ESRF BM29 / City: Grenoble / 国: France / Type of source: X-ray synchrotron / Wavelength: 0.099 Å / Dist. spec. to detc.: 2.864 mm
DetectorName: Pilatus 1M / Type: Dectris / Pixsize x: 172 mm
Scan
Title: Human glycine decarboxylase with glycine / Measurement date: Nov 12, 2017 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 0.5 sec. / Number of frames: 10 / Unit: 1/nm /
MinMax
Q0.0902 4.9335
ResultType of curve: single_conc /
ExperimentalPorod
MW197 kDa-
Volume-315 nm3

GuinierGuinier error
Forward scattering, I0138.06 0.1
Radius of gyration, Rg3.96 nm0.01

MinMax
Guinier point5 51

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