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- SASDD73: Flavin reductase Pden_5119 (NADPH-dependent FMN reductase, Pden_5119) -

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Open data


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Basic information

Entry
Database: SASBDB / ID: SASDD73
SampleFlavin reductase Pden_5119
  • NADPH-dependent FMN reductase (protein), Pden_5119, Paracoccus denitrificans (strain Pd 1222)
Function / homology: / NADPH-dependent FMN reductase-like / NADPH-dependent FMN reductase / Flavoprotein-like superfamily / oxidoreductase activity / NADPH-dependent FMN reductase
Function and homology information
Biological speciesParacoccus denitrificans (strain Pd 1222) (bacteria)
Contact author
  • Tomas Klumpler (CEITEC - Central European Institute of Technology, Masaryk University)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1760
Type: atomic / Software: (1.1.0) / Radius of dummy atoms: 1.90 A / Symmetry: P2 / Chi-square value: 1.032 / P-value: 0.178897
Model #1758
Type: dummy / Software: (5.3) / Radius of dummy atoms: 1.50 A / Symmetry: P2 / Chi-square value: 0.817 / P-value: 0.541867

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Sample

SampleName: Flavin reductase Pden_5119 / Specimen concentration: 1.50-7.50
BufferName: 50 mM sodium phosphate buffer, 300 mM NaCl, 500 mM imidazole
pH: 8
Entity #951Name: Pden_5119 / Type: protein / Description: NADPH-dependent FMN reductase / Formula weight: 20.596 / Num. of mol.: 2 / Source: Paracoccus denitrificans (strain Pd 1222) / References: UniProt: A1BCD5
Sequence: MPGPRIVAFA GSWSRPSKTR SLVEEAARRA VARFGGSAHV FDIADLGPDF GSLRQPQDGP HTRHLDAFLA ADALIVASPV YKGSYTGLFK HFIDLIEPVA LVGKPVLLAA TGGGDRHALV IEHQLRPVFG FFEAHTLATG LYVSASDFGP DGLASEAAST RLDRAVAQFA ...Sequence:
MPGPRIVAFA GSWSRPSKTR SLVEEAARRA VARFGGSAHV FDIADLGPDF GSLRQPQDGP HTRHLDAFLA ADALIVASPV YKGSYTGLFK HFIDLIEPVA LVGKPVLLAA TGGGDRHALV IEHQLRPVFG FFEAHTLATG LYVSASDFGP DGLASEAAST RLDRAVAQFA AHLSRHDAAP LLAVGLEHHH HHH

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Experimental information

BeamInstrument name: CEITEC Rigaku BioSAXS-1000 / City: Brno / 国: Czech Republic / Type of source: X-ray in house / Wavelength: 0.154 Å / Dist. spec. to detc.: 0.48 mm
DetectorName: Pilatus 100K / Pixsize x: 172 mm
Scan
Title: Flavin reductase Pden_5119 / Measurement date: Feb 22, 2016 / Storage temperature: 4 °C / Cell temperature: 4 °C / Exposure time: 600 sec. / Number of frames: 30 / Unit: 1/A /
MinMax
Q0.0152 0.3012
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 200 /
MinMax
Q0.0152168 0.301234
P(R) point1 200
R0 62.68
Result
Type of curve: merged /
ExperimentalPorod
MW41 kDa43.6 kDa
Volume-69.8 nm3

P(R)GuinierGuinier error
Forward scattering, I00.1389 0.14 0.0015
Radius of gyration, Rg2.3 nm2.34 nm0.098

MinMax
D-6.27
Guinier point1 29

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