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- SASDCS4: Collagenase ColG s2s3as3b at pCa 3 (Collagenase ColG segement s2s... -

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Basic information

Entry
Database: SASBDB / ID: SASDCS4
SampleCollagenase ColG s2s3as3b at pCa 3
  • Collagenase ColG segement s2s3as3b (protein), s2s3as3b, Hathewaya histolytica
Function / homology
Function and homology information


tripeptidase activity / microbial collagenase / collagen metabolic process / collagen binding / metalloendopeptidase activity / endopeptidase activity / calcium ion binding / proteolysis / zinc ion binding / extracellular region
Similarity search - Function
Collagenase ColG, catalytic helper subdomain / Collagenase G catalytic helper subdomain / Peptidase M9A/M9B, collagenase, bacterial / Peptidase M9, collagenase, N-terminal domain / Collagenase / Peptidase family M9 N-terminal / PKD domain / Peptidase, C-terminal, archaeal/bacterial / Bacterial pre-peptidase C-terminal domain / Polycystic kidney disease (PKD) domain profile. ...Collagenase ColG, catalytic helper subdomain / Collagenase G catalytic helper subdomain / Peptidase M9A/M9B, collagenase, bacterial / Peptidase M9, collagenase, N-terminal domain / Collagenase / Peptidase family M9 N-terminal / PKD domain / Peptidase, C-terminal, archaeal/bacterial / Bacterial pre-peptidase C-terminal domain / Polycystic kidney disease (PKD) domain profile. / PKD domain / PKD domain superfamily / PKD/Chitinase domain / Repeats in polycystic kidney disease 1 (PKD1) and other proteins / Neutral zinc metallopeptidases, zinc-binding region signature. / Immunoglobulin-like fold
Similarity search - Domain/homology
Biological speciesHathewaya histolytica (bacteria)
Contact author
  • Christopher Ruth (University of Arkansas, Fayetteville, AR, USA)

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Structure visualization

Structure viewerMolecule:
MolmilJmol/JSmol

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Models

Model #1295
Type: dummy / Software: (2.6.1) / Radius of dummy atoms: 2.50 A / Symmetry: P1 / Chi-square value: 0.512 / P-value: 0.290360
Search similar-shape structures of this assembly by Omokage search (details)

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Sample

SampleName: Collagenase ColG s2s3as3b at pCa 3 / Specimen concentration: 1.00-3.00
BufferName: 10mM HEPES 100mM NaCl 0.2mM EGTA / pH: 7.5
Entity #693Name: s2s3as3b / Type: protein / Description: Collagenase ColG segement s2s3as3b / Formula weight: 37.2 / Num. of mol.: 1 / Source: Hathewaya histolytica / References: UniProt: Q9X721
Sequence: GSPGIPGTDN ADISNNKAPI AKVTGPSTGA VGRNIEFSGK DSKDEDGKIV SYDWDFGDGA TSRGKNSVHA YKKAGTYNVT LKVTDDKGAT ATESFTIEIK NEDTTTPITK EMEPNDDIKE ANGPIVEGVT VKGDLNGSDD ADTFYFDVKE DGDVTIELPY SGSSNFTWLV ...Sequence:
GSPGIPGTDN ADISNNKAPI AKVTGPSTGA VGRNIEFSGK DSKDEDGKIV SYDWDFGDGA TSRGKNSVHA YKKAGTYNVT LKVTDDKGAT ATESFTIEIK NEDTTTPITK EMEPNDDIKE ANGPIVEGVT VKGDLNGSDD ADTFYFDVKE DGDVTIELPY SGSSNFTWLV YKEGDDQNHI ASGIDKNNSK VGTFKSTKGR HYVFIYKHDS ASNISYSLNI KGLGNEKLKE KENNDSSDKA TVIPNFNTTM QGSLLGDDSR DYYSFEVKEE GEVNIELDKK DEFGVTWTLH PESNINDRIT YGQVDGNKVS NKVKLRPGKY YLLVYKYSGS GNYELRVNK

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Experimental information

BeamInstrument name: Advanced Light Source (ALS) 12.3.1 (SIBYLS)
City: Berkeley, CA / 国: USA / Type of source: X-ray synchrotron / Wavelength: 0.1127 Å / Dist. spec. to detc.: 1.5 mm
DetectorName: Pilatus3 X 2M / Pixsize x: 172 mm
Scan
Title: Collagenase ColG s2s3as3b at pCa 3 / Measurement date: Oct 12, 2016 / Storage temperature: 4 °C / Cell temperature: 10 °C / Unit: 1/A /
MinMax
Q0.0125 0.5413
Distance distribution function P(R)
Sofotware P(R): GNOM 5.0 / Number of points: 356 /
MinMax
Q0.027594 0.225473
P(R) point1 356
R0 126.7
Result
Type of curve: extrapolated
ExperimentalPorodEstimatedEstimated method
MW37.2 kDa---
Volume-52 nm380 DAMFILT

P(R)P(R) errorGuinierGuinier error
Forward scattering, I04.08 0.05 3.94 0.05
Radius of gyration, Rg3.21 nm0.06 2.96 nm0.48

MinMax
D-12.7
Guinier point29 56

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