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- SASDCR8: Glucose isomerase (Xylose isomerase) -

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Basic information

Entry
Database: SASBDB / ID: SASDCR8
SampleGlucose isomerase
  • Xylose isomerase (protein), Streptomyces rubiginosus
Function / homology
Function and homology information


xylose isomerase / xylose isomerase activity / D-xylose metabolic process / magnesium ion binding / identical protein binding / cytoplasm
Similarity search - Function
Xylose isomerase, actinobacteria / Xylose isomerase / Xylose isomerase family profile. / : / Xylose isomerase-like, TIM barrel domain / Xylose isomerase-like TIM barrel / Xylose isomerase-like superfamily
Similarity search - Domain/homology
Biological speciesStreptomyces rubiginosus (bacteria)
Contact author
  • Clement Blanchet (EMBL-Hamburg, European Molecular Biology Laboratory (EMBL) - Hamburg outstation, Notkestraße 85, Geb. 25A, 22607 Hamburg, Deutschland, Germany)

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Structure visualization

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Models

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Sample

SampleName: Glucose isomerase / Specimen concentration: 4.07 mg/ml
BufferName: 100 mM HEPES, 1 mM MgCl2 / pH: 7
Entity #847Type: protein / Description: Xylose isomerase / Formula weight: 43.227 / Num. of mol.: 4 / Source: Streptomyces rubiginosus / References: UniProt: P24300
Sequence: MNYQPTPEDR FTFGLWTVGW QGRDPFGDAT RRALDPVESV RRLAELGAHG VTFHDDDLIP FGSSDSEREE HVKRFRQALD DTGMKVPMAT TNLFTHPVFK DGGFTANDRD VRRYALRKTI RNIDLAVELG AETYVAWGGR EGAESGGAKD VRDALDRMKE AFDLLGEYVT ...Sequence:
MNYQPTPEDR FTFGLWTVGW QGRDPFGDAT RRALDPVESV RRLAELGAHG VTFHDDDLIP FGSSDSEREE HVKRFRQALD DTGMKVPMAT TNLFTHPVFK DGGFTANDRD VRRYALRKTI RNIDLAVELG AETYVAWGGR EGAESGGAKD VRDALDRMKE AFDLLGEYVT SQGYDIRFAI EPKPNEPRGD ILLPTVGHAL AFIERLERPE LYGVNPEVGH EQMAGLNFPH GIAQALWAGK LFHIDLNGQN GIKYDQDLRF GAGDLRAAFW LVDLLESAGY SGPRHFDFKP PRTEDFDGVW ASAAGCMRNY LILKERAAAF RADPEVQEAL RASRLDELAR PTAADGLQAL LDDRSAFEEF DVDAAAARGM AFERLDQLAM DHLLGARG

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Experimental information

BeamInstrument name: PETRA III P12 / City: Hamburg / 国: Germany / Type of source: X-ray synchrotron / Wavelength: 0.124 Å / Dist. spec. to detc.: 1.6 mm
DetectorName: Eiger 4M / Pixsize x: 75 mm
Scan
Title: Glucose isomerase / Measurement date: Dec 21, 2016 / Storage temperature: 20 °C / Cell temperature: 20 °C / Exposure time: 0.001 sec. / Number of frames: 1 / Unit: 1/nm /
MinMax
Q0.0867 5.5042
ResultExperimental MW: 125 kDa / Type of curve: single_conc
Comments: Only one concentration was measured. There might be some repulsive interactions as the guinier region is not linear and the Rg and volume are smaller than expected.
GuinierGuinier error
Forward scattering, I01524400 3312
Radius of gyration, Rg2.74 nm0.01

MinMax
Guinier point1 148

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