+Open data
-Basic information
Entry | Database: SASBDB / ID: SASDCG9 |
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Sample | Nanolipoprotein Particle (NLP) with Telodendrimer - 100% D2O SANS
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Function / homology | Function and homology information ABC transporters in lipid homeostasis / Chylomicron assembly / Chylomicron remodeling / HDL remodeling / Scavenging by Class B Receptors / HDL clearance / Scavenging of heme from plasma / Scavenging by Class A Receptors / Heme signaling / lipase inhibitor activity ...ABC transporters in lipid homeostasis / Chylomicron assembly / Chylomicron remodeling / HDL remodeling / Scavenging by Class B Receptors / HDL clearance / Scavenging of heme from plasma / Scavenging by Class A Receptors / Heme signaling / lipase inhibitor activity / Retinoid metabolism and transport / high-density lipoprotein particle receptor binding / spherical high-density lipoprotein particle / regulation of intestinal cholesterol absorption / protein oxidation / vitamin transport / Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) / Post-translational protein phosphorylation / cholesterol import / HDL assembly / high-density lipoprotein particle binding / blood vessel endothelial cell migration / negative regulation of heterotypic cell-cell adhesion / apolipoprotein A-I receptor binding / negative regulation of cytokine production involved in immune response / negative regulation of cell adhesion molecule production / negative regulation of very-low-density lipoprotein particle remodeling / Platelet degranulation / discoidal high-density lipoprotein particle / peptidyl-methionine modification / intermediate-density lipoprotein particle / phosphatidylcholine biosynthetic process / glucocorticoid metabolic process / acylglycerol homeostasis / phosphatidylcholine-sterol O-acyltransferase activator activity / positive regulation of phospholipid efflux / positive regulation of cholesterol metabolic process / lipid storage / phospholipid homeostasis / lipid transporter activity / chylomicron / high-density lipoprotein particle remodeling / phospholipid efflux / phospholipid transport / chemorepellent activity / cholesterol transfer activity / reverse cholesterol transport / very-low-density lipoprotein particle / high-density lipoprotein particle assembly / low-density lipoprotein particle / lipoprotein biosynthetic process / cholesterol transport / high-density lipoprotein particle / regulation of Cdc42 protein signal transduction / triglyceride homeostasis / endothelial cell proliferation / negative regulation of interleukin-1 beta production / cholesterol efflux / positive regulation of cholesterol efflux / positive regulation of Rho protein signal transduction / adrenal gland development / cholesterol binding / cholesterol biosynthetic process / lipoprotein particle binding / endocytic vesicle / negative regulation of tumor necrosis factor-mediated signaling pathway / animal organ regeneration / phospholipid metabolic process / positive regulation of substrate adhesion-dependent cell spreading / positive regulation of phagocytosis / positive regulation of stress fiber assembly / heat shock protein binding / cholesterol metabolic process / cholesterol homeostasis / integrin-mediated signaling pathway / regulation of protein phosphorylation / negative regulation of inflammatory response / phospholipid binding / extracellular vesicle / amyloid-beta binding / protein stabilization / G protein-coupled receptor signaling pathway / lipid binding / enzyme binding / cell surface / protein homodimerization activity / extracellular space / extracellular region / identical protein binding / cytosol Similarity search - Function |
Biological species | Mus musculus (house mouse) |
Citation | Journal: Protein Sci / Year: 2018 Title: Small-angle X-ray and neutron scattering demonstrates that cell-free expression produces properly formed disc-shaped nanolipoprotein particles. Authors: Thomas E Cleveland / Wei He / Angela C Evans / Nicholas O Fischer / Edmond Y Lau / Matthew A Coleman / Paul Butler / Abstract: Nanolipoprotein particles (NLPs), composed of membrane scaffold proteins and lipids, have been used to support membrane proteins in a native-like bilayer environment for biochemical and structural ...Nanolipoprotein particles (NLPs), composed of membrane scaffold proteins and lipids, have been used to support membrane proteins in a native-like bilayer environment for biochemical and structural studies. Traditionally, these NLPs have been prepared by the controlled removal of detergent from a detergent-solubilized protein-lipid mixture. Recently, an alternative method has been developed using direct cell-free expression of the membrane scaffold protein in the presence of preformed lipid vesicles, which spontaneously produces NLPs without the need for detergent at any stage. Using SANS/SAXS, we show here that NLPs produced by this cell-free expression method are structurally indistinguishable from those produced using detergent removal methodologies. This further supports the utility of single step cell-free methods for the production of lipid binding proteins. In addition, detailed structural information describing these NLPs can be obtained by fitting a capped core-shell cylinder type model to all SANS/SAXS data simultaneously. |
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-Structure visualization
-Downloads & links
-Data source
SASBDB page | SASDCG9 |
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-Related structure data
Related structure data | C: citing same article (ref.) |
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Similar structure data | Similarity search - Function & homologyF&H Search |
-External links
Related items in Molecule of the Month |
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-Models
-Sample
Sample | Name: Nanolipoprotein Particle (NLP) with Telodendrimer - 100% D2O SANS Specimen concentration: 0.83 mg/ml / Entity id: 862 / 866 |
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Buffer | Name: PBS in D2O / pH: 7.4 Comment: 8 g/L NaCl, 0.2 g/L KH2PO4, 1.15 g/L Na2HPO4, 0.2 g/L KCl, in D2O with no additional pH adjustment |
Entity #862 | Name: DMPC / Type: other / Description: 1,2-dimyristoyl-sn-glycero-3-phosphocholine / Formula weight: 0.678 |
Entity #866 | Name: ApoA-I / Type: protein / Description: Apolipoprotein A-I / Formula weight: 26.068 / Num. of mol.: 2 / Source: Mus musculus / References: UniProt: Q00623 Sequence: MSGSHHHHHH SSGIEGRGRL IKHMLNLLEN WDTLGSTVSQ LQERLGPLTR DFWDNLEKET DWVRQEMNKD LEEVKQKVQP YLDEFQKKWK EDVELYRQKV APLGAELQES ARQKLQELQG RLSPVAEEFR DRMRTHVDSL RTQLAPHSEQ MRESLAQRLA ELKSNPTLNE ...Sequence: MSGSHHHHHH SSGIEGRGRL IKHMLNLLEN WDTLGSTVSQ LQERLGPLTR DFWDNLEKET DWVRQEMNKD LEEVKQKVQP YLDEFQKKWK EDVELYRQKV APLGAELQES ARQKLQELQG RLSPVAEEFR DRMRTHVDSL RTQLAPHSEQ MRESLAQRLA ELKSNPTLNE YHTRAKTHLK TLGEKARPAL EDLRHSLMPM LETLKTKAQS VIDKASETLT AQGSG |
-Experimental information
Beam | Instrument name: NIST Center for Neutron Research NG7 / City: Gaithersburg, MD / 国: USA / Type of source: neutron source / Wavelength: 0.6 Å / Dist. spec. to detc.: 4 mm | ||||||||||||||||||||||||
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Detector | Name: Ordela 2660N / Type: 640x640 mm 3He posn sensitive prop counter / Pixsize x: 5.08 mm | ||||||||||||||||||||||||
Scan | Title: Nanolipoprotein Particle (NLP) with Telodendrimer - 100% D2O SANS Measurement date: Nov 25, 2015 / Storage temperature: 4 °C / Cell temperature: 20 °C / Exposure time: 1800 sec. / Number of frames: 1 / Unit: 1/A /
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Distance distribution function P(R) | Sofotware P(R): GNOM 5.0 / Number of points: 159 /
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Result | Experimental MW: 142 kDa / Type of curve: single_conc Comments: Additional SANS measurement parameters. Three detector positions (in m) and count times (s) were employed: 1 m (two frames of 300 + 900 = 1200 s total count time); 4 m (one frames of 1800 s ...Comments: Additional SANS measurement parameters. Three detector positions (in m) and count times (s) were employed: 1 m (two frames of 300 + 900 = 1200 s total count time); 4 m (one frames of 1800 s total count time); 13 m (two frames of 300 + 1200 = 1500 s total count time).
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